View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9989_low_9 (Length: 342)
Name: NF9989_low_9
Description: NF9989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9989_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 65 - 321
Target Start/End: Original strand, 1080411 - 1080667
Alignment:
| Q |
65 |
ggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgtggtcattgacatgggaacaaatcaagttaaggtaacaact |
164 |
Q |
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| T |
1080411 |
ggtcacagatgttggaatcccatacatagttcgtggtgattcgataaagaaaggagctgtggtcattgacatgggaacaaatcaagttaaggtaacaact |
1080510 |
T |
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| Q |
165 |
caaannnnnnnacttcaatattttatggtttcctttggattctgaatgcgtggaggtacttgaaatttttatttttctatttgcagaacttggtgctatt |
264 |
Q |
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| T |
1080511 |
caaaaatttttacttcaatattttaaggtttcctttggattctgaatgcatggaagtacttgaaatttttatttttctatttgaagaacttggtgctatt |
1080610 |
T |
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| Q |
265 |
ttcagatgacttgtcaaatatatactcaaagttaacaaggcacaaactcaaagaggt |
321 |
Q |
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| T |
1080611 |
ttcagatgacttgtcaaatatatactcaaagttaaaaaggcacaaactcaaagaggt |
1080667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 321
Target Start/End: Original strand, 1042670 - 1042966
Alignment:
| Q |
25 |
caaagaatcctgaacaaataacgtctgaagcggatattgcggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgt |
124 |
Q |
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| T |
1042670 |
caaagaatcctgaacgaataacgtctgaagcggatattgtggtcacagatgttggaatcccaaacatagttcgtggtgattggataaagaaaggagctgt |
1042769 |
T |
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| Q |
125 |
ggtcattgacatgggaacaaatcaagttaaggtaacaactcaaannnnnnnacttcaatattttatggtttcctttggattctgaatgcgtggaggtact |
224 |
Q |
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| T |
1042770 |
cgtcattgatatgggaacaaatcaagttaaggtaacaactaaaaactttttacttcaatattttaaggtttcttttggcgtctgaatgcatggaggtact |
1042869 |
T |
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| Q |
225 |
tgaaatttttatttttctatttgcagaacttggtgctattttcagatgacttgtcaaatatatactcaaagttaacaaggcacaaactcaaagaggt |
321 |
Q |
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| T |
1042870 |
tgaaatttttattttgttatttgaagaacttggtgctattttcagatgacttgtcaaatatatattcagagttaataaggcacaaactagaagaggt |
1042966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 1066809 - 1067003
Alignment:
| Q |
34 |
ctgaacaaataacgtctgaagcggatattgcggtcacagatgttggaatccaaaacatagttcgtggtgattcgataaagaaaggagctgtggtcattga |
133 |
Q |
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||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1066809 |
ctgaacaaataacgtctgaagcgaatattgtggtcacatatattggaatccgaaacatagttcgtggtgattggataaagaaaggagctgtggtcattga |
1066908 |
T |
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| Q |
134 |
catgggaacaaatcaagttaaggtaacaactcaaannnnnnnacttcaatattttatggtttcctttggattctgaatgcgtggaggtacttgaa |
228 |
Q |
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| T |
1066909 |
cacgggaacaaatcaagttaatgtaacaactattttttttttacttgaatatttttaagtttcctttggcttctgaatgcatggaggtacttgaa |
1067003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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