View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9990_high_3 (Length: 243)
Name: NF9990_high_3
Description: NF9990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9990_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 473959 - 474196
Alignment:
| Q |
1 |
tttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
473959 |
tttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggt |
474058 |
T |
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| Q |
101 |
atgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtacg----------tatatata |
190 |
Q |
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| T |
474059 |
atgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtacgtatatatatatatatata |
474158 |
T |
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| Q |
191 |
tatgctttactatcaccctttcattctttgttattatt |
228 |
Q |
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| T |
474159 |
tatgctttactatcaccatttcattctttgttattatt |
474196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 466498 - 466672
Alignment:
| Q |
6 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgag |
105 |
Q |
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| T |
466498 |
acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag |
466597 |
T |
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| Q |
106 |
tcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggta |
180 |
Q |
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| T |
466598 |
tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta |
466672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 445781 - 445863
Alignment:
| Q |
89 |
cttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttattt |
171 |
Q |
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| T |
445781 |
cttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttattt |
445863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 479433 - 479613
Alignment:
| Q |
1 |
tttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggt |
100 |
Q |
| |
|
||||||||||||||| || | |||||||||| |||||| |||||| ||||||||||||||||| || | |||||| |||| | ||||| ||||| |
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| T |
479433 |
tttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggt |
479532 |
T |
|
| Q |
101 |
atgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtac |
181 |
Q |
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| T |
479533 |
ttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtac |
479613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 454889 - 454956
Alignment:
| Q |
113 |
gtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggta |
180 |
Q |
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| T |
454889 |
gtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta |
454956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 27493931 - 27493756
Alignment:
| Q |
6 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgag |
105 |
Q |
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|||||||||| || | ||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| | |||| | |||||||||||| |||| |
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| T |
27493931 |
acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag |
27493832 |
T |
|
| Q |
106 |
tcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtac |
181 |
Q |
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| T |
27493831 |
tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtac |
27493756 |
T |
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