View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9990_high_6 (Length: 211)
Name: NF9990_high_6
Description: NF9990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9990_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 55471811 - 55471634
Alignment:
| Q |
23 |
aacacttgtactcatcttcttttaaacacaataatttaatttgtgatgaaaaaagtcttgccctttagctaatttgattaaaactaattggagttttctg |
122 |
Q |
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| T |
55471811 |
aacacttgtactcatcttcttttaaacacaataatttaatttgtgatgaaaaaagtcttgctctttagctaatttgattaaaactaattggagttttctg |
55471712 |
T |
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| Q |
123 |
tgcatattaccttctccttcagatctccggtctgaatggctatgttcattgactcctaaagaatccatacctatgctt |
200 |
Q |
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| T |
55471711 |
tgcatattaccttctccttcagatctcaggtctgaagggctatgttcattgactcctaaagaatccatacttatgctt |
55471634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 55439761 - 55439928
Alignment:
| Q |
23 |
aacacttgtactcatcttcttttaaacacaataatttaa--tttgtgatgaaaaaagtcttgccctttagctaatttgattaaaactaattggagttttc |
120 |
Q |
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||||||||||||| ||||||||||||||||||||||| | |||| ||||||||| || | | ||||||| | ||||||| ||| |||||||||||||| |
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| T |
55439761 |
aacacttgtactcgtcttcttttaaacacaataattttaattttgagatgaaaaatgttt--ctctttagcaactttgatttaaagtaattggagttttc |
55439858 |
T |
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| Q |
121 |
tgtgcatattaccttctccttcagatctccggtctgaatggctatgttcattgactcctaaagaatccat |
190 |
Q |
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| T |
55439859 |
tgtgcagattaccttctccttcagagctcaggtctgaagggctatgtccattgacacctgaagaatccat |
55439928 |
T |
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