View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9990_low_1 (Length: 863)
Name: NF9990_low_1
Description: NF9990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9990_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 448 - 847
Target Start/End: Original strand, 5135004 - 5135402
Alignment:
| Q |
448 |
ctataagcagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg |
547 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135004 |
ctataagcagcttttaacccgaatcacgactatgacactgttagtcaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg |
5135103 |
T |
|
| Q |
548 |
caacttataatcacatttcagtatcaggatgctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttccaaactgcaca |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135104 |
caacttataatcacatttcagtatcaggatgctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttccaaactgcaca |
5135203 |
T |
|
| Q |
648 |
ctcattcaactagtttagggtgtgccctaattgtgaattggagaggaaggtagcaaaactgtcccacattgagctaaataatctcttgtcaataatcgca |
747 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
5135204 |
ctcattcaactagtttagagt-acccctaattgtgaattggagaggaaggtagcataactgtcccacattgagctaaataatgtcttgtcaattatcgca |
5135302 |
T |
|
| Q |
748 |
atcaaggaaagatttatggtgagcacataccccctttcaaaaactgatcaaccgtttcaagtatacatatccaacatattggtgaaaagtaagaagtcac |
847 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135303 |
atcaaggaaagatttatggtgggcacttaccccctttcaaaaactgatcaaccgtttcaagtatacatatccaacatattggtgaaaagtaagaagtcac |
5135402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 448 - 847
Target Start/End: Original strand, 5099736 - 5100128
Alignment:
| Q |
448 |
ctataagcagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg |
547 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5099736 |
ctataagcagcttttaacccgaatcacgactatgacactgttagccaccactaagtacatagttgaagccagattattcagcttttagcgtcgcctaata |
5099835 |
T |
|
| Q |
548 |
caacttataat------cacatttcagtatcaggatg---ctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttcca |
638 |
Q |
| |
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||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
5099836 |
caacttataatacgcatcacatttcagtatcaggatgatgctgcctcccatggtttctgcaaactcctc--------------ccccttggtggcttcca |
5099921 |
T |
|
| Q |
639 |
aactgcacactcattcaactagtttagggtgtgccctaattgtgaattggagaggaaggtagcaaaactgtcccacattgagctaaataatctcttgtca |
738 |
Q |
| |
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||| ||||||||||||||||||||||||||| | |||||||||||||| || ||||||||||| |||| ||| ||||||||| ||||| |||||||||| |
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| T |
5099922 |
aaccgcacactcattcaactagtttagggtg--cactaattgtgaattgaagtggaaggtagcataactctcctacattgagc-aaatactctcttgtca |
5100018 |
T |
|
| Q |
739 |
ataatcgcaatcaaggaaagatttatggtgagcacata-ccccctttcaaaaactgatcaaccgtttcaagtatacatatccaacatattggtgaaaagt |
837 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5100019 |
ataatcgcaatcaaggaaagatttatggtgggcacttaaccccctttcaaaaactgatcaaccgtttcaagtattcatatccaacatattggtgaaaagt |
5100118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 450 - 729
Target Start/End: Complemental strand, 5058132 - 5057851
Alignment:
| Q |
450 |
ataagcagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg-- |
547 |
Q |
| |
|
|||||||||||| ||| ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
5058132 |
ataagcagcttt-aactccagtcacgattatgacactgttagccaccactaaatacatagttgaagccagattgttcagcttttatcgtcacctaatgtg |
5058034 |
T |
|
| Q |
548 |
-----caacttataat------cacatttcagtatcaggatgctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttc |
636 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||| ||||||| |||| |
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| T |
5058033 |
acaggcgacttataatatgcagcacatttcagtatcaggatgctgccacccatggtttctgcaaa----------gtgcagcctacttcttggtggcttc |
5057944 |
T |
|
| Q |
637 |
caaactgcacactcattcaactagtttagggtgtgccctaattgtgaattggagaggaaggtagcaaaactgtcccacattgagctaaataat |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||| | ||||||| |
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| T |
5057943 |
caaactgcacactcattcaactagtttagggtgtgccctaattgtgaattggagtggaaggtagtatatctgtcccacattgaccaaaataat |
5057851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 30975364 - 30975250
Alignment:
| Q |
337 |
ccttcgaaatttgatgtcactggttgcctgagatttaaagtaatgtttggcgattctattattcattttttctctgttttattctcattaatctcatttg |
436 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| ||| | ||||| ||||||||||||||| || |||||| |||||||||||||||| |
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| T |
30975364 |
cctttgaaatttgatgtcactggttgccttagatttaaagtaatttttagttattctgttattcattttttctttgctttattttcattaatctcatttg |
30975265 |
T |
|
| Q |
437 |
aatgataccaactat |
451 |
Q |
| |
|
||||||||||||||| |
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|
| T |
30975264 |
aatgataccaactat |
30975250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 30975456 - 30975414
Alignment:
| Q |
279 |
tatagtgtgtatagttggttggctattttgaataattgagagt |
321 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||| |||| |
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| T |
30975456 |
tataatgtgtatagttggttggctattttgaacaattgtgagt |
30975414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 389 - 451
Target Start/End: Original strand, 19909626 - 19909688
Alignment:
| Q |
389 |
attctattattcattttttctctgttttattctcattaatctcatttgaatgataccaactat |
451 |
Q |
| |
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||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
19909626 |
attctgttattcattttttctttgctttattctcattaatctcatttgaatgataccaactat |
19909688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 25569268 - 25569341
Alignment:
| Q |
41 |
tgttgtggatcgatcaaatatagtttcagacagtggattacagatttcatgtgtaaattaattgagtgctgggg |
114 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| || ||||| |||||| |||| | ||||||||||| |
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|
| T |
25569268 |
tgttgtggattgatcaaatatagtttcagacagtggattgcaaatttcttgtgtagattagtggagtgctgggg |
25569341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 15856587 - 15856545
Alignment:
| Q |
279 |
tatagtgtgtatagttggttggctattttgaataattgagagt |
321 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |||| |
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| T |
15856587 |
tataatgtgtatagttggttggctattttgaacaattgtgagt |
15856545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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