View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9990_low_10 (Length: 220)
Name: NF9990_low_10
Description: NF9990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9990_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40614074 - 40613854
Alignment:
| Q |
1 |
atccacaaccaccttcacgtgcctttctagacacaatacaagaaatcacacaaatctattcttcacttccacctagaccttctatagaagaaatagaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40614074 |
atccacaaccaccttcacgtgcctttctagacacaatacaagaaatcacacaaatctattcttcacttccacctagaccttctatagaagaaatagaagc |
40613975 |
T |
|
| Q |
101 |
tgcaacgtcaacgcttgacactcttaacaacgtggaacaaacgaaactccaagaaattgcagtac-aagaaaaaccacaagatgttcctgaagatctttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40613974 |
tgcaacgtcaacgcttgacactcttaacaacgtggaacaaacgaaactccaagaaattgcagtacaaagaaaaaccacaagatgttcctgaagatctttt |
40613875 |
T |
|
| Q |
200 |
ctatgttcttcaacaactcaa |
220 |
Q |
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||||||||| ||||||||||| |
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| T |
40613874 |
ctatgttctccaacaactcaa |
40613854 |
T |
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