View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9990_low_2 (Length: 586)

Name: NF9990_low_2
Description: NF9990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9990_low_2
NF9990_low_2
[»] chr1 (6 HSPs)
chr1 (1-344)||(22022710-22023052)
chr1 (363-454)||(38236310-38236401)
chr1 (363-454)||(6923477-6923568)
chr1 (363-411)||(51387129-51387177)
chr1 (363-396)||(10008375-10008408)
chr1 (363-428)||(27840307-27840372)
[»] chr5 (4 HSPs)
chr5 (363-454)||(16222654-16222745)
chr5 (363-415)||(4082576-4082628)
chr5 (363-415)||(16349715-16349767)
chr5 (363-410)||(40951477-40951524)
[»] chr7 (2 HSPs)
chr7 (363-400)||(7853691-7853728)
chr7 (363-400)||(28226134-28226171)
[»] chr4 (3 HSPs)
chr4 (363-428)||(17558825-17558890)
chr4 (363-400)||(9199866-9199903)
chr4 (363-400)||(9201405-9201442)
[»] chr8 (4 HSPs)
chr8 (363-415)||(16367864-16367916)
chr8 (363-411)||(26960209-26960257)
chr8 (363-415)||(42308123-42308175)
chr8 (363-415)||(44656369-44656421)
[»] chr3 (3 HSPs)
chr3 (363-401)||(44708227-44708265)
chr3 (363-400)||(5561553-5561590)
chr3 (363-412)||(38507979-38508028)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 22022710 - 22023052
Alignment:
Q  1 ttacgtaactaatatatggtaatgttatagtctaagaaagacttcaaaacgtgttatctgcaaagttactcttactagactttagtattaggtagggttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22022710 ttacgtaactaatatatggtaatgttatagtctaagaaagacttcaaaacgtgttatctgcaaagttactct-actagactttagtattaggtagggttt 22022808  T
Q  101 agttatccaaatgaacccatgcctcttgggaatgctttcttatgggaaaagtaacaaaagggaaaatatcaatttcattcaaaattatgcgcattaccat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22022809 agttatccaaatgaacccatgcctcttgggaatgctttcttatgggaaaagtaacaaaagggaaaatatcaatttcattcaaaattatgcgcattaccaa 22022908  T
Q  201 gttcaatcctcaatatgtttggtactttatcttgtttatttactaaaataagataaattttgtctagataaacgacttgaattattaaagcaaaagacat 300  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22022909 gttcaatcctccatatgtttggtaccttatcttgtttatttactaaaataagataaattttgtctagataaacgacttgacttattaaagcaaaagacat 22023008  T
Q  301 aaacggttgttcctctacttgcttccaagacccaggggatgggt 344  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  22023009 aaacggttgttcctctacttgcttccaagacccaagggatgggt 22023052  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 454
Target Start/End: Original strand, 38236310 - 38236401
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacattaactgaaattcattgtcatatgtccgacgaaattaataca 454  Q
    ||||||||||||||||||||    ||||||||||||||| |||||||||||||  |||| |||||| | |||||||  ||| ||||||||||    
T  38236310 actagatcgtctacccgtgcggcagcacgggtcatatatagctaaaaacattagttgaacttcattctaatatgtcaaacgtaattaataca 38236401  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 454
Target Start/End: Complemental strand, 6923568 - 6923477
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacattaactgaaattcattgtcatatgtccgacgaaattaataca 454  Q
    ||||||||||||||||||||    ||||||||||||||| |||||||| ||||  |||| |||||| | |||||||  ||| ||||||||||    
T  6923568 actagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaacttcattctaatatgtcaaacgtaattaataca 6923477  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 51387129 - 51387177
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaac 411  Q
    |||||||||||||||||||||  |||||||||||||||| | |||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaac 51387177  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Original strand, 10008375 - 10008408
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtca 396  Q
    |||||||||||||||||||||| |||||||||||    
T  10008375 actagatcgtctacccgtgctaccgcacgggtca 10008408  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 27840307 - 27840372
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 428  Q
    |||||||||||||||||||||  |||||||||||| ||| | | |||||||||  || ||||||||    
T  27840307 actagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacattacttgcaattcatt 27840372  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 454
Target Start/End: Complemental strand, 16222745 - 16222654
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacattaactgaaattcattgtcatatgtccgacgaaattaataca 454  Q
    |||||||||||||||||||||  |||||  ||||||||| |||||||||||||  |||| |||||| | |||||||  ||| ||||||||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaacttcattctaatatgtcaaacgtaattaataca 16222654  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 4082628 - 4082576
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacatta 415  Q
    ||||||||||| |||||||||  |||||||||||||||| | |||||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 4082576  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 16349715 - 16349767
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacatta 415  Q
    ||||||||||| |||||||||  |||||||||||||||| | |||||||||||    
T  16349715 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 16349767  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 40951524 - 40951477
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaa 410  Q
    |||||||||||||||||||||  |||||||||||||||| | ||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaa 40951477  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 7853728 - 7853691
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatata 400  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7853728 actagatcgtctacccgtgctaccgcacgggtcatata 7853691  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 28226171 - 28226134
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatata 400  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  28226171 actagatcgtctacctgtgctaccgcacgggtcatata 28226134  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 17558825 - 17558890
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 428  Q
    |||||||||||||||||||||  |||||||||||||||| || ||||| || |  |||||||||||    
T  17558825 actagatcgtctacccgtgctgccgcacgggtcatatatagccaaaaagataatatgaaattcatt 17558890  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 9199866 - 9199903
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatata 400  Q
    |||||||||||||||||||||  |||||||||||||||    
T  9199866 actagatcgtctacccgtgctgccgcacgggtcatata 9199903  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 9201405 - 9201442
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatata 400  Q
    |||||||||||||||||||||  |||||||||||||||    
T  9201405 actagatcgtctacccgtgctgccgcacgggtcatata 9201442  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 16367916 - 16367864
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacatta 415  Q
    |||||||||||||||||||||  |||||||||||||||| | | |||||||||    
T  16367916 actagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 26960257 - 26960209
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaac 411  Q
    ||||||||||||| |||||||  |||||||||||||||| | |||||||    
T  26960257 actagatcgtctatccgtgctgccgcacgggtcatatatagttaaaaac 26960209  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 42308123 - 42308175
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacatta 415  Q
    ||||||||||| ||| |||||  |||||||||||||||| | |||||||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacatta 42308175  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 44656369 - 44656421
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaacatta 415  Q
    ||||| ||||||||||| |||| |||||||||||||||| | | |||||||||    
T  44656369 actagttcgtctacccgcgctaccgcacgggtcatatatagtttaaaacatta 44656421  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 44708227 - 44708265
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatat 401  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  44708227 actagatcgtctacccgtgctgccgcacgggtcatatat 44708265  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 5561553 - 5561590
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatata 400  Q
    |||||||||||||||||||||  |||||||||||||||    
T  5561553 actagatcgtctacccgtgctgccgcacgggtcatata 5561590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 38507979 - 38508028
Alignment:
Q  363 actagatcgtctacccgtgctaacgcacgggtcatatatggctaaaaaca 412  Q
    ||||||||| |||||||||||  |||||||||||| ||| ||||||||||    
T  38507979 actagatcgcctacccgtgctgtcgcacgggtcatttatagctaaaaaca 38508028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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