View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9990_low_8 (Length: 237)
Name: NF9990_low_8
Description: NF9990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9990_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29771020 - 29771240
Alignment:
| Q |
1 |
acattatagtacttaattaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatat |
100 |
Q |
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| T |
29771020 |
acattatagtacttaattaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatat |
29771119 |
T |
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| Q |
101 |
atcaaggtgatgtaatacaattgatagaaaacctaattcataactactccattataataaccccattttctcctctgtgatttttctctgcgtgtgatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29771120 |
atcaaggtgatgtaatacaattgatagaaaacctaattcataactactccatt---ataaccccattttctcctctgtgatttttctctgcgtgtgatat |
29771216 |
T |
|
| Q |
201 |
agatgatttgattatgtagaatgt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
29771217 |
agatgatttgattatgtagaatgt |
29771240 |
T |
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