View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9990_low_9 (Length: 220)
Name: NF9990_low_9
Description: NF9990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9990_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 32211730 - 32211528
Alignment:
| Q |
1 |
tctgcaggttaatagtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32211730 |
tctgcaggttaatagtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatc |
32211631 |
T |
|
| Q |
101 |
agtgagatccaagtcaaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32211630 |
agtgagatccaagtcaaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccg |
32211531 |
T |
|
| Q |
201 |
cgt |
203 |
Q |
| |
|
||| |
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|
| T |
32211530 |
cgt |
32211528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 32111160 - 32111346
Alignment:
| Q |
17 |
gcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatccaagtca |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32111160 |
gcaatcaatatcctctatcacaagtatagaacggttggacatgctgagaataagttgcttcaagctcttattatcccctacattagtgagatccaagtca |
32111259 |
T |
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| Q |
117 |
aagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccgcgt |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32111260 |
tagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgt |
32111346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 32182865 - 32183056
Alignment:
| Q |
12 |
atagtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatcca |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||| | | ||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
32182865 |
atagtgcaatcaatatcctctatcacaagtatagcacggttggacatgctgagaataagttgcttcaaggtcttattatcccctacatcggtgagatcca |
32182964 |
T |
|
| Q |
112 |
agtcaaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccgcgt |
203 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32182965 |
agtcatagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgt |
32183056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 32119181 - 32119368
Alignment:
| Q |
16 |
tgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatccaagtc |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
32119181 |
tgcaatcaatatcctctatcacaagtatagaacgattgggaatgtcaagaataagttgcttcaagctcttattatcctctacattagtgagatccaagtc |
32119280 |
T |
|
| Q |
116 |
aaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccgcgt |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32119281 |
atagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgt |
32119368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 32157149 - 32157340
Alignment:
| Q |
12 |
atagtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatcca |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||||| | | || |||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
32157149 |
atagtgcaatcaatatcctctatcacaagtatcgcacggttggacatgctgagaattagttgcttcaagctcttattatcctctacatctgtgagatcca |
32157248 |
T |
|
| Q |
112 |
agtcaaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccgcgt |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
32157249 |
agtcatagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgt |
32157340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 32205998 - 32205807
Alignment:
| Q |
12 |
atagtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatcca |
111 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| ||||||||||||| |
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| T |
32205998 |
atagtgcaatcgatatcctctatcacaagtatagaacggttggacataccaagaataagctgcttcaagatcttattatcttgtacgtcagtgagatcca |
32205899 |
T |
|
| Q |
112 |
agtcaaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccgcgt |
203 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32205898 |
agtcatagatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgt |
32205807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 32158570 - 32158758
Alignment:
| Q |
15 |
gtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatccaagt |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||| ||||| ||||||||| || | |
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|
| T |
32158570 |
gtgcaatcaatatcctctatcacaagtatagaacgattggacatgtcaagaataagttgcttcaagcgcttattatcttgtacattagtgagatctaaat |
32158669 |
T |
|
| Q |
115 |
caaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccgcgt |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32158670 |
catagatatcatagttgagatagttagccatggctgcaatcaaactagactttccagtaccaggagggccatacaacaagtaaccgcgt |
32158758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 32174826 - 32175017
Alignment:
| Q |
12 |
atagtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatcca |
111 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||| || ||| |||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
32174826 |
atagtgcaatcaatatcctctatcactagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatcca |
32174925 |
T |
|
| Q |
112 |
agtcaaagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaaccgcgt |
203 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |
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|
| T |
32174926 |
agtcatagatatcatacttgagatagttagccatggcagcaatcaagctagactttccagtacaaggtggaccaaacaacaagtaaccgcgt |
32175017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32534359 - 32534448
Alignment:
| Q |
1 |
tctgcaggttaatagtgcaatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattat |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | || |||||||||||| |
|
|
| T |
32534359 |
tctgcaggttaatagtgcaatcaatgtcctctatcacaagtatagaacggttggacatgccaagaataagtttcctcgagctcttattat |
32534448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 8043902 - 8043841
Alignment:
| Q |
138 |
ttagccatggctgcaatcaagctagactttccagtaccaggaggaccatacaacaagtaacc |
199 |
Q |
| |
|
|||||||| || |||||||| ||||| || ||||| || ||||||||||||||||| ||||| |
|
|
| T |
8043902 |
ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataacc |
8043841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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