View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9991_high_1 (Length: 694)
Name: NF9991_high_1
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 35 - 453
Target Start/End: Original strand, 36524666 - 36525082
Alignment:
| Q |
35 |
gcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgtatgctgatgttgaaaacattg |
134 |
Q |
| |
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|||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36524666 |
gcaactggcggaaagtagaatgcaaaggggtgaatttgtagag--gcactgaagtttgctaacaaggccaaaacgatgtatgctgatgttgaaaacattg |
36524763 |
T |
|
| Q |
135 |
ctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctctc |
234 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| ||||| || |||| |||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
36524764 |
ctcagatccttactgtttgtgaggttcacaatgctgcacttaacaagctgtctaagtctgatatggactggtatggaattcttcagacagaaagtctctc |
36524863 |
T |
|
| Q |
235 |
cgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgatt |
334 |
Q |
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||||||||| ||||||| ||||||||||||||| || | | |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36524864 |
cgaggaagcaatcataaagaaacagtacagaaaactcggattgctacttcatcttgataaaaataaatttactggtgcagaagctgcgttcaagttgatt |
36524963 |
T |
|
| Q |
335 |
ggggaagccaatagcgttttgactgaccaagcaaagcgatcattatacgacatgaaggttaaagcccatgtaagacatgcagtacctaagacctcatacc |
434 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |||| ||||| ||||||| |||||||| ||||| || |||||||||||||||| |||| || |
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| T |
36524964 |
ggggaagccaatagcgtgttgactgaccaagcaaagtgatctttataggacatgatagttaaagctcatgtgagtgatgcagtacctaagacttcatccc |
36525063 |
T |
|
| Q |
435 |
atcactcaaatgggaatgt |
453 |
Q |
| |
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|||||||||||| |||||| |
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| T |
36525064 |
atcactcaaatgcgaatgt |
36525082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 33 - 450
Target Start/End: Original strand, 36530999 - 36531414
Alignment:
| Q |
33 |
aagcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgtatgctgatgttgaaaacat |
132 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
36530999 |
aagcaactggcagaaactaaaatgcaaaggggtgaatttgtagat--gcactgaagtttgctaacaaggccaaaaggctctatgctgatgttgaaaacat |
36531096 |
T |
|
| Q |
133 |
tgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctc |
232 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| || |||| || ||| ||||||||||||||| |||||||| | |||| | |
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| T |
36531097 |
tgctcagatccttgctgtttgtgaggttcacaatgctgcactcaacaagctgtctaagtatgatatggactggtatggagttcttcagactgaaaaatta |
36531196 |
T |
|
| Q |
233 |
tccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttga |
332 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
36531197 |
tccgaggaagcaatcataaagaaacagtacaagaagcttgcactgctacttcatcctgataaaaataaatctgctggtgcagaagctgctttcaagttga |
36531296 |
T |
|
| Q |
333 |
ttggggaagccaatagcgttttgactgaccaagcaaagcgatcattatacgacatgaaggttaaagcccatgtaagacatgcagtacctaagacctcata |
432 |
Q |
| |
|
|||||||||||||||| || |||| ||| |||||| ||| || ||||||||||| ||||||||||||||||| ||| ||||| | |||||||||||| |
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|
| T |
36531297 |
ttggggaagccaatagggtgttgagtgataaagcaacgcggtctttatacgacataaaggttaaagcccatgttagagctgcagcatctaagacctcatc |
36531396 |
T |
|
| Q |
433 |
ccatcactcaaatgggaa |
450 |
Q |
| |
|
||||| ||| |||||||| |
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|
| T |
36531397 |
ccatccctctaatgggaa |
36531414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 26306355 - 26305989
Alignment:
| Q |
18 |
gaggctgtgagggtaaagcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgtatgc |
117 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26306355 |
gaggctgtaagggctaaacaactggcggaaactaaaatgcaaaggggtgaattcgtagat--gcactgaagtttgctaaaaaggccaaaaatctgtatgc |
26306258 |
T |
|
| Q |
118 |
tgatgttgaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattctt |
217 |
Q |
| |
|
|| ||| ||||||||||||||| | ||||| |||||||||||||||| ||||||||| || ||||||||||||| ||||||||||| |||| ||||||| |
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|
| T |
26306257 |
tggtgtggaaaacattgctcaggtccttgcagtttgtgaggttcacattgctgcactgaagaaactctctatgtttgaaatggactattatgaaattctt |
26306158 |
T |
|
| Q |
218 |
caggcagaaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaatttgctggtgcagaag |
317 |
Q |
| |
|
||| || | || ||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
26306157 |
cagacacatagattctccgaggaagcaatcataaagacgcagtacagaaagctcgcactgctacttcatcctgataaaaataaattttctggtgctgaag |
26306058 |
T |
|
| Q |
318 |
ctgcgttcaagttgattggggaagccaatagcgttttgactgaccaagcaaagcgatcattatacgaca |
386 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| ||||||| |||||||||| | ||||| ||||| |||| |
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|
| T |
26306057 |
ctgctttcaagttgattggagaagccaatagggttttgagtgaccaagcacaacgatctttatatgaca |
26305989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 36552492 - 36552675
Alignment:
| Q |
14 |
agacgaggctgtgagggtaaagcaactggcggaaactaagatgcaaattggtgaatttgtagagaggcactgaagtttgctaacaaggccaaaaatctgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
36552492 |
agacgaggctgtgagggtaaagcaactggcggaaactaagatgcaaattggtgaatttgtagag--gcactgaagtttgctaacaaggccaaaaagctgt |
36552589 |
T |
|
| Q |
114 |
atgctgatgttgaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36552590 |
atgctgatgttgaaaacattgctcagatccttactgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatg |
36552675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 152 - 274
Target Start/End: Complemental strand, 20716342 - 20716220
Alignment:
| Q |
152 |
tgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctctccgaggaagccatcataa |
251 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||| ||||||| |||||||||||| | |||| || |
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|
| T |
20716342 |
tgtgaggttcacaatgctgcactcagcaaactctctaggtgtgaaatggactggtatgaaattcttcagacagaaagactctccgaggaaacaatcacaa |
20716243 |
T |
|
| Q |
252 |
ggaaacagtacagaaagcttgca |
274 |
Q |
| |
|
|||||||||||||||| ||||| |
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| T |
20716242 |
agaaacagtacagaaagattgca |
20716220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 152 - 381
Target Start/End: Complemental strand, 47090764 - 47090535
Alignment:
| Q |
152 |
tgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctctccgaggaagccatcataa |
251 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| | | || | | | || ||||| | |||| |
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|
| T |
47090764 |
tgtgaggttcactgtgctgcacagaacaaactctctatgtctgatatggactggtatggaattcttctgactgataaatttactgatgaagcaacaataa |
47090665 |
T |
|
| Q |
252 |
ggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgt |
351 |
Q |
| |
|
||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||| | ||| || || || || |
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|
| T |
47090664 |
agaagcagtataaaaagcttgcactgctacttcatcctgataaaaataaatctgctggggcagaggctgctttcaagttgatcgtggatgctaacagagt |
47090565 |
T |
|
| Q |
352 |
tttgactgaccaagcaaagcgatcattata |
381 |
Q |
| |
|
|||| ||||||| ||||||| || ||||| |
|
|
| T |
47090564 |
attgagtgaccaaacaaagcgttctttata |
47090535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 6791477 - 6791535
Alignment:
| Q |
284 |
catcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
342 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
6791477 |
catcctgacaaaaacaagtttgctggtgcagaagctgcatttaagctgattggggaagc |
6791535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 49156858 - 49156796
Alignment:
| Q |
280 |
acttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
342 |
Q |
| |
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|||||||||||||||||| || ||||| ||||| |||||||| || ||| ||||||| ||||| |
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|
| T |
49156858 |
acttcatcctgataaaaacaagtttgccggtgctgaagctgcatttaagctgattggagaagc |
49156796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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