View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_high_10 (Length: 412)
Name: NF9991_high_10
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_high_10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 28506896 - 28507297
Alignment:
| Q |
11 |
gacatcacaatcagtgtttcaaaagacttgtcaggtggctcaacaagtcattaacatatttatcttgtctttccatattgacaaacaagtccttcatgtt |
110 |
Q |
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| T |
28506896 |
gacatcacaatcagtgtttcaaaagacttgtaaggtggctcaacaagttattaacatatttatcttgtctttcaatattgacaaacaagtccttcatgtt |
28506995 |
T |
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| Q |
111 |
cttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaactgaatcacttgtgaaagacccatctctctcatct |
210 |
Q |
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| T |
28506996 |
cttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaaccgaatcacttgtgaaagacccatctctctcatct |
28507095 |
T |
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| Q |
211 |
ctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
28507096 |
ctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtggcttctcatgttgaa |
28507195 |
T |
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| Q |
311 |
cggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccac |
410 |
Q |
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| T |
28507196 |
ctgcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccatgtgacctaatatcttcatttgtgggacccaatcagtgcataccac |
28507295 |
T |
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| Q |
411 |
tc |
412 |
Q |
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|| |
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| T |
28507296 |
tc |
28507297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 62 - 412
Target Start/End: Original strand, 28494401 - 28494751
Alignment:
| Q |
62 |
taacatatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcct |
161 |
Q |
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| T |
28494401 |
taacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattatccctatagatccttccctcttcttcaaccataactaacct |
28494500 |
T |
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| Q |
162 |
aattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttatt |
261 |
Q |
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| T |
28494501 |
aatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttatt |
28494600 |
T |
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| Q |
262 |
ccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
361 |
Q |
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| T |
28494601 |
ccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
28494700 |
T |
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| Q |
362 |
ctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactc |
412 |
Q |
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| T |
28494701 |
ccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactc |
28494751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 66 - 412
Target Start/End: Original strand, 28491086 - 28491432
Alignment:
| Q |
66 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
165 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||| ||| | || |||||||||| || || || |||||| |
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| T |
28491086 |
atatctatcttgtctttcaatattgacaaacaagtccttcacctctttaatattttccctatatatcctcccttcttcttcaagcataactagtctaatt |
28491185 |
T |
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| Q |
166 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
265 |
Q |
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| T |
28491186 |
gtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccct |
28491285 |
T |
|
| Q |
266 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctat |
365 |
Q |
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| T |
28491286 |
ggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaattgccat |
28491385 |
T |
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| Q |
366 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactc |
412 |
Q |
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| T |
28491386 |
gtgccctaatatcttcatttgcggagcccaatcagtgcatacaactc |
28491432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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