View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_high_13 (Length: 384)
Name: NF9991_high_13
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 26879537 - 26879891
Alignment:
| Q |
18 |
acattggtggtacaattcaagccgaggcgaagcgaccctatccgttatacttggtatcattttcatttcatttttaaattaatttgactcattgtttagc |
117 |
Q |
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| T |
26879537 |
acattggtggtacaattcaagccgaggcgaagcgaccctatccgttatacttggtatcattttcatttcatttttaaattaatttgactcattgtttagc |
26879636 |
T |
|
| Q |
118 |
atagactaatgtgatcgagaatattttggtatttcgttgttaagttgacaatgttctataattttggagactaaattaatttttattattcttgttaacg |
217 |
Q |
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| T |
26879637 |
atagactaatgtgatcgagaatattttggtatttcgttgttaagttgacaatgttctataattttggagactaaattaattgctattattcttgttaacg |
26879736 |
T |
|
| Q |
218 |
ctacggccaaagtatgttgagatttttgtttcttttgtctagaaagaatggagagtcacatgattgggtacgctcatggagggagacacttttttcgttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26879737 |
ctacggccaaagtatgttgagatttttgtttcttttgtctagaaagaatggagagtcacatgattgggtacgctcatggaaggagacacttttttcgttg |
26879836 |
T |
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| Q |
318 |
cttgaagatatcccacttaaccttcgcaaagacattgtgtcgatttctattgatg |
372 |
Q |
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| T |
26879837 |
cttgaagatatcccacttaaccttcgcaaagacattgtgtcgatttctattgatg |
26879891 |
T |
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