View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_high_2 (Length: 540)
Name: NF9991_high_2
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 95 - 525
Target Start/End: Complemental strand, 4287137 - 4286711
Alignment:
| Q |
95 |
gctctgatatctattagttattgttgatttgaaatatgtcatgcatcttgatgctctaatgatcaaatctatcactctgacctggatgacataaattggt |
194 |
Q |
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| T |
4287137 |
gctctgatatctattagttagtgttgatttgaaatatgtcat----cttgatgctctaatgatcaaatctatcactctgaactggatgacataaattggt |
4287042 |
T |
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| Q |
195 |
ttgaactttgaatattagttagtgttgtttggatatgtttgctctaatgtttgtaactgaagcttcttaaaatatatatactttcttcatgctttcatca |
294 |
Q |
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| T |
4287041 |
ttgaacttcgaatattagttagtgtttcttggatatgtttgctctaaagtttgtaattgaagcttcttataatatatatactttcttcatgctttcatca |
4286942 |
T |
|
| Q |
295 |
atcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaac |
394 |
Q |
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| T |
4286941 |
atcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaac |
4286842 |
T |
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| Q |
395 |
aatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttaccaagtgctagtttatt |
494 |
Q |
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| T |
4286841 |
aatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttgccaagtgctagtttatt |
4286742 |
T |
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| Q |
495 |
gcatgtagtcaaatttatgattttttgatgt |
525 |
Q |
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| T |
4286741 |
gcatgtagtcaaatttatgatttttttatgt |
4286711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
318 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
372 |
Q |
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| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
271 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
332 |
Q |
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|||| |||||||||||||| ||||| |||||||| |||||| | |||||||| |||||||| |
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| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
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