View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_high_20 (Length: 238)
Name: NF9991_high_20
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5391172 - 5390950
Alignment:
| Q |
1 |
caagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391172 |
caagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatt |
5391073 |
T |
|
| Q |
101 |
tggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391072 |
tggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggt |
5390973 |
T |
|
| Q |
201 |
ttgagatcgatgattatggattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5390972 |
ttgagatcgatgattatggattt |
5390950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5399891 - 5399669
Alignment:
| Q |
1 |
caagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399891 |
caagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatt |
5399792 |
T |
|
| Q |
101 |
tggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggt |
200 |
Q |
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| T |
5399791 |
tggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggt |
5399692 |
T |
|
| Q |
201 |
ttgagatcgatgattatggattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5399691 |
ttgagatcgatgattatggattt |
5399669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5394710 - 5394488
Alignment:
| Q |
1 |
caagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||| |
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| T |
5394710 |
caagcatgagggtcttcctttaaggtttcctggctcaaaaggtgcatgggagtgttattctactgcttcagatgctaatttaatagccgaacaacatatt |
5394611 |
T |
|
| Q |
101 |
tggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggt |
200 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5394610 |
tggggtgcagcggatcctaacgcaaagaatgaagcattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcagaacggt |
5394511 |
T |
|
| Q |
201 |
ttgagatcgatgattatggattt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5394510 |
ttgagatcgatgattatggattt |
5394488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 3818947 - 3818850
Alignment:
| Q |
89 |
gaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
186 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| ||||||||||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
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| T |
3818947 |
gaacaacatatttgggctgcagtggatccttatgctaagaatgaagcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
3818850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 47338933 - 47339027
Alignment:
| Q |
92 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
186 |
Q |
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||||||||||||| ||||||||||||| |||| ||||||||||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
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| T |
47338933 |
caacatatttgggctgcagtggatccttatgctaagaatgaagcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
47339027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 47349942 - 47350036
Alignment:
| Q |
92 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
186 |
Q |
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||||| ||||||| |||||||||| || |||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
47349942 |
caacacatttgggctgcagtggatacttatgctaagaatgaagcgttcaattgtagcaatggtgatgtttttaggtggaaacaattgtggaaggt |
47350036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 47347403 - 47347514
Alignment:
| Q |
92 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttag |
191 |
Q |
| |
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||||||||||||| |||||||||||| |||| ||||| ||||| || ||||| |||||||| |||||||| || |||||||| | |||||||| || | |
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| T |
47347403 |
caacatatttgggccgcagtggatccttatgctaagaacgaagcttttaactgtagcaatggtgatgtttttagatggaaacaactatggaaggttttgg |
47347502 |
T |
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| Q |
192 |
cagaacggtttg |
203 |
Q |
| |
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| |||| ||||| |
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| T |
47347503 |
cggaacagtttg |
47347514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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