View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9991_high_21 (Length: 233)

Name: NF9991_high_21
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9991_high_21
NF9991_high_21
[»] chr1 (3 HSPs)
chr1 (1-233)||(5391385-5391617)
chr1 (1-233)||(5395196-5395428)
chr1 (1-205)||(5401343-5401547)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5391385 - 5391617
Alignment:
Q  1 cctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatcttacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391385 cctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatcttacc 5391484  T
Q  101 gactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcctt 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391485 gactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcctt 5391584  T
Q  201 aacattgaaccgttaacttcgcagttttgagcc 233  Q
    ||||||||||||||||||| |||||||||||||    
T  5391585 aacattgaaccgttaactttgcagttttgagcc 5391617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5395196 - 5395428
Alignment:
Q  1 cctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatcttacc 100  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  5395196 cctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggccttgatcttacc 5395295  T
Q  101 gactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcctt 200  Q
    ||   |||| |||||||| | |||||||||  |||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  5395296 gatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggctcgaaggacgttcctt 5395395  T
Q  201 aacattgaaccgttaacttcgcagttttgagcc 233  Q
    |||||||||||||||||||||||||||||||||    
T  5395396 aacattgaaccgttaacttcgcagttttgagcc 5395428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5401343 - 5401547
Alignment:
Q  1 cctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatcttacc 100  Q
    ||||||| | |||||||||||||  ||||| |||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| || |||||||||||    
T  5401343 cctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatcttacc 5401442  T
Q  101 gactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcctt 200  Q
    ||  ||||| |||| ||| |  |||||||||   || |||||||| || |||||  |||||||  ||| ||||||||| |||||| |||||||||||||     
T  5401443 gatgatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctc 5401542  T
Q  201 aacat 205  Q
    |||||    
T  5401543 aacat 5401547  T

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