View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_high_3 (Length: 516)
Name: NF9991_high_3
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 8691095 - 8690606
Alignment:
| Q |
18 |
ccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccacactgtgtccttctgttaaaccttttactatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691095 |
ccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccacactgtgtccttctgttaaaccttttactatttg |
8690996 |
T |
|
| Q |
118 |
cgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690995 |
cgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcat |
8690896 |
T |
|
| Q |
218 |
ttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatca |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690895 |
ttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatca |
8690796 |
T |
|
| Q |
318 |
ttaccaagtaac-nnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagt |
416 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690795 |
ttaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgtcatagttatgaggaaatgagt |
8690696 |
T |
|
| Q |
417 |
ttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaatgagacaaagagagactttctaataccacctatg |
506 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690695 |
ttgtcattgcttgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaatgagacaaagagagactttctaataccacctatg |
8690606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 99 - 393
Target Start/End: Complemental strand, 8705294 - 8704991
Alignment:
| Q |
99 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
198 |
Q |
| |
|
|||||||||||||| || || || || ||||| |||||| || ||||||||||| || |||| ||||||| | ||| |||||||||||||| ||| |
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| T |
8705294 |
ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaa |
8705195 |
T |
|
| Q |
199 |
aacattagaaagattgcatttttgtgagaaaataatgatggg---gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttca |
290 |
Q |
| |
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||||||| |||| |||||||||| |||||||||||||| ||| ||||||| ||||||||| ||||||||||| | |||||||||||||||||| |
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| T |
8705194 |
aacattaaaaaggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttca |
8705095 |
T |
|
| Q |
291 |
gctataacattgttgacaatggaatcattaccaagtaac-nnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag |
389 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8705094 |
gctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag |
8704995 |
T |
|
| Q |
390 |
gaac |
393 |
Q |
| |
|
|||| |
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|
| T |
8704994 |
gaac |
8704991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 99 - 323
Target Start/End: Complemental strand, 8740370 - 8740138
Alignment:
| Q |
99 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
198 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || |||||| |||||||||||||| | |||| |||||||||| |||| ||||||||||||| ||| |
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| T |
8740370 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaa |
8740271 |
T |
|
| Q |
199 |
aacattagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttca |
290 |
Q |
| |
|
||||||| ||| ||| ||| | | ||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
8740270 |
aacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttca |
8740171 |
T |
|
| Q |
291 |
gctataacattgttgacaatggaatcattacca |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
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|
| T |
8740170 |
gctataacattgtttacaatggaatcattacca |
8740138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 246 - 392
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
| Q |
246 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaac-nnnnnnngagatagt |
344 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| |
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| T |
8722216 |
ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt |
8722117 |
T |
|
| Q |
345 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
392 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
8722116 |
agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 14372433 - 14372554
Alignment:
| Q |
99 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
198 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| |||||| |||||||||||||| || |||| ||||||| || |||||||||||||||||| || |
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| T |
14372433 |
ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaag |
14372532 |
T |
|
| Q |
199 |
aacattagaaagattgcatttt |
220 |
Q |
| |
|
||||||| |||| ||||||||| |
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|
| T |
14372533 |
aacattaaaaaggttgcatttt |
14372554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
| Q |
246 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
325 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
8723561 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 392
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
| Q |
251 |
tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaac-nnnnnnngagatagtggttt |
349 |
Q |
| |
|
|||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || |
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| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta |
8738544 |
T |
|
| Q |
350 |
acaagctcttcatctgttggtcggaatctgaatccaacaggaa |
392 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
8738543 |
actagttcttcatttgttggtcggaatctgaatccgacaggaa |
8738501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 8738824 - 8738729
Alignment:
| Q |
98 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga |
193 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| || |||| |||||||| | |||| |||||| ||||| |
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|
| T |
8738824 |
gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaaga |
8738729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 8723729 - 8723586
Alignment:
| Q |
99 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
198 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||| || |||||||||||||| | |||| |||||||||| |||| |||||||||| | |||| |
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|
| T |
8723729 |
ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctgaaaaacaacaaa |
8723630 |
T |
|
| Q |
199 |
aaca-ttagaaagattgcatttttgtgagaaaataatgatgggg |
241 |
Q |
| |
|
|||| | | ||| || |||||||||| ||||||||||||||| |
|
|
| T |
8723629 |
aacagtaataaaaatcacatttttgtgccaaaataatgatgggg |
8723586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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