View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9991_high_4 (Length: 492)

Name: NF9991_high_4
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9991_high_4
NF9991_high_4
[»] chr1 (6 HSPs)
chr1 (274-482)||(16011640-16011848)
chr1 (121-243)||(16011199-16011317)
chr1 (23-124)||(16010818-16010919)
chr1 (17-97)||(2758845-2758925)
chr1 (24-84)||(45377647-45377707)
chr1 (24-103)||(47295886-47295965)
[»] chr8 (4 HSPs)
chr8 (24-107)||(40691030-40691113)
chr8 (29-105)||(44652713-44652789)
chr8 (20-89)||(2621570-2621639)
chr8 (29-106)||(22738423-22738500)
[»] chr7 (4 HSPs)
chr7 (24-106)||(32555950-32556032)
chr7 (24-107)||(41016016-41016099)
chr7 (24-106)||(9270970-9271052)
chr7 (30-96)||(42672594-42672660)
[»] chr5 (4 HSPs)
chr5 (19-90)||(17743111-17743182)
chr5 (29-89)||(41387110-41387170)
chr5 (50-103)||(28207527-28207580)
chr5 (28-81)||(8570450-8570505)
[»] chr4 (4 HSPs)
chr4 (24-107)||(22319798-22319881)
chr4 (24-82)||(11432657-11432715)
chr4 (24-97)||(41819484-41819557)
chr4 (19-107)||(55957809-55957897)
[»] chr3 (4 HSPs)
chr3 (31-106)||(29563840-29563915)
chr3 (24-89)||(20601419-20601484)
chr3 (24-106)||(21524007-21524089)
chr3 (51-103)||(11837140-11837192)
[»] chr2 (1 HSPs)
chr2 (50-106)||(5880059-5880115)
[»] chr6 (1 HSPs)
chr6 (48-106)||(24556851-24556909)
[»] scaffold0036 (1 HSPs)
scaffold0036 (37-106)||(53209-53278)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 274 - 482
Target Start/End: Original strand, 16011640 - 16011848
Alignment:
Q  274 aatatacaattaaaaaacaaagtaaaggtaatgttaagttagttggttgacgtggaagcagttgaagaagcgcgccaatatctcatcccctttccttcaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  16011640 aatatacaattaaaaaacaaagtaaaggtaatgttaagttagttggttgacgtggaagccgttcaagaagcgcgccaatatctcatcccctttccttcaa 16011739  T
Q  374 cgaaacattcgcatcttctctttctctctcaatttctcaatccaatcttgctcatcacacacttgttcatgcaaatctcacacgtagaaagaatgacgct 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16011740 cgaaacattcgcatcttctctttctctctcaatttctcaatccaatcttgctcatcacacacttgttcaagcaaatctcacacgtagaaagaatgacgct 16011839  T
Q  474 tgacctttg 482  Q
    |||||||||    
T  16011840 tgacctttg 16011848  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 16011199 - 16011317
Alignment:
Q  121 tactataaaatagggatacgaacacggataccagacacaacaactaataatttgagttaatagcataattcaatgtaatatgtgtcagtgtctgtcttgt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |    |||| |||    
T  16011199 tactataaaatagggatacgaacacggataccagacacaacaactaataatttgagttaatcgcataattcaatgtaatatgtgttgg----tgtcgtgt 16011294  T
Q  221 ccgacaccaggacacacttaatt 243  Q
    ||||||||| |||||||||||||    
T  16011295 ccgacaccatgacacacttaatt 16011317  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 16010818 - 16010919
Alignment:
Q  23 accagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatccctacgatagatatctaata 122  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||| |||||||||| ||||| |||||||    
T  16010818 accagacttaggccttcaaaagaattggcaggccagactcaggccttacaaagcctagctcggcctagcctattcccatccctacggtagatgtctaata 16010917  T
Q  123 ct 124  Q
    ||    
T  16010918 ct 16010919  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 2758925 - 2758845
Alignment:
Q  17 tcacagaccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattc 97  Q
    |||||| ||||  ||||||||| |||| |||||||||||||| ||||  |||| |||||||||||||| |||||| |||||    
T  2758925 tcacaggccaggattaggccttaaaaaaaattggcaggccaggctcaacccttgcaaagcctagctcggcctaacctattc 2758845  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 45377707 - 45377647
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcg 84  Q
    |||| |||||||||| |||  |||||||| ||||||||||  |||||||||||||||||||    
T  45377707 ccaggcttaggcctttaaagaaattggcatgccagactcaagccttacaaagcctagctcg 45377647  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 47295886 - 47295965
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcc 103  Q
    |||||||||| ||||||||  | ||| |||||||| ||||| |||| |||| |||||||||||||| | ||||| |||||    
T  47295886 ccagacttagaccttcaaagaatttgacaggccaggctcaggccttgcaaatcctagctcgacctagcctattcccatcc 47295965  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 40691113 - 40691030
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatccctac 107  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |||| | ||||| |||||||||    
T  40691113 ccaggcttaggccttcaaaaaaattggcaggccagactcaggccttgcaaagcctagctcggcctagcctattcccatccctac 40691030  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 44652713 - 44652789
Alignment:
Q  29 cttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatccct 105  Q
    ||||||||| ||||| | |||||||||||| ||||| |||| |||||||||||||| |||| | ||||| |||||||    
T  44652713 cttaggcctccaaaaaatttggcaggccaggctcaggccttgcaaagcctagctcggcctagcctattcccatccct 44652789  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2621570 - 2621639
Alignment:
Q  20 cagaccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgaccta 89  Q
    |||| ||| ||| ||||||||||| ||||||||||||| |||||| ||||||||| |||| |||| ||||    
T  2621570 cagatcaggctttggccttcaaaaaaattggcaggccaaactcaggccttacaaaacctaactcggccta 2621639  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 22738500 - 22738423
Alignment:
Q  29 cttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    |||| |||||||||| | |||||| ||||||||||| |||| |||||||||||||| |||| | ||||| || |||||    
T  22738500 cttatgccttcaaaaaacttggcaagccagactcaggccttgcaaagcctagctcggcctagcttattcccaccccta 22738423  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 32555950 - 32556032
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    |||||||| |||||||||||||||| |||  | |  ||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  32555950 ccagactttggccttcaaaagaattagcaaacgaagctcaggccttgcaaagcctagctcgacctaacatattcccatcccta 32556032  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 41016016 - 41016099
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatccctac 107  Q
    |||| ||||||||||||||| | |||||||| ||| ||||| |||| |||||| ||||||| | || | ||||| |||||||||    
T  41016016 ccaggcttaggccttcaaaaaagttggcaggtcaggctcaggccttccaaagcttagctcggcttagcctattctcatccctac 41016099  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 9271052 - 9270970
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    |||| ||||||||||||||| | ||| |||| ||| |||||||||| ||||||||| |||| |||| | ||||| || |||||    
T  9271052 ccaggcttaggccttcaaaacatttgacaggtcaggctcagaccttgcaaagcctaactcggcctagcctattctcaccccta 9270970  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 42672660 - 42672594
Alignment:
Q  30 ttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatatt 96  Q
    |||||| || |||| |||||||| ||||| ||||| |||| |||| |||| ||||||||||||||||    
T  42672660 ttaggcttttaaaaaaattggcaagccaggctcaggccttgcaaaacctaactcgacctaacatatt 42672594  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 17743111 - 17743182
Alignment:
Q  19 acagaccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaa 90  Q
    ||||||||||||||| ||||||||| | ||| ||| ||| ||||||| ||| ||||||||||||||||||||    
T  17743111 acagaccagacttagtccttcaaaaaatttgccagaccaaactcagatcttgcaaagcctagctcgacctaa 17743182  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 41387110 - 41387170
Alignment:
Q  29 cttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgaccta 89  Q
    ||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| |||| ||||    
T  41387110 cttaggccttctaaaaaattggcaggccagggtcagatcttacaaagcctaactcggccta 41387170  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 28207527 - 28207580
Alignment:
Q  50 gcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcc 103  Q
    |||| |||| || ||||||| ||||||||||||||||||||| ||||| |||||    
T  28207527 gcagaccaggcttagaccttgcaaagcctagctcgacctaacttattcccatcc 28207580  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 8570450 - 8570505
Alignment:
Q  28 acttaggccttcaaaagaa--ttggcaggccagactcagaccttacaaagcctagc 81  Q
    |||||||||||||||| ||  ||||||||  |||||||| ||||||||||||||||    
T  8570450 acttaggccttcaaaaaaaaattggcaggttagactcaggccttacaaagcctagc 8570505  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 22319881 - 22319798
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatccctac 107  Q
    |||||||||||||||||||| ||||| ||  | | ||||||||||| ||||||||| ||| ||||||| ||||| |||||||||    
T  22319881 ccagacttaggccttcaaaaaaattgacaaactaaactcagaccttgcaaagcctaactcaacctaacctattcccatccctac 22319798  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 11432657 - 11432715
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagct 82  Q
    |||| ||||||||||||||| ||||||||||||||  |||| ||||||||||| |||||    
T  11432657 ccaggcttaggccttcaaaaaaattggcaggccaggttcaggccttacaaagcttagct 11432715  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 41819484 - 41819557
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattc 97  Q
    ||||||||| |||||||| | | |||||||||||| ||||  ||||||||||| ||||||| |||||| |||||    
T  41819484 ccagacttatgccttcaacaaatttggcaggccaggctcaagccttacaaagcatagctcggcctaacctattc 41819557  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 55957809 - 55957897
Alignment:
Q  19 acagaccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatccctac 107  Q
    ||||||||||||| ||| || |||| |  ||||||||||| || || |||| |||||||||||||| ||||   ||||| |||||||||    
T  55957809 acagaccagactttggctttaaaaaaatatggcaggccaggcttaggccttgcaaagcctagctcggcctagtctattctcatccctac 55957897  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 29563840 - 29563915
Alignment:
Q  31 taggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    ||||||||||||| |||||||||||||||||| | |||| |||||||||||||| |||| | ||||| || |||||    
T  29563840 taggccttcaaaaaaattggcaggccagactcgggccttgcaaagcctagctcggcctagcctattcccaccccta 29563915  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 20601484 - 20601419
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgaccta 89  Q
    |||| ||||||||||||||| | |||||||||||| ||||| |||| |||||||||||||| ||||    
T  20601484 ccaggcttaggccttcaaaaaatttggcaggccaggctcaggccttgcaaagcctagctcggccta 20601419  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 21524007 - 21524089
Alignment:
Q  24 ccagacttaggccttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    |||| ||||||||||||||| |||| | ||||||| |||||||||| ||||||||| |||  |||| | ||||| ||||||||    
T  21524007 ccaggcttaggccttcaaaaaaatttgtaggccaggctcagaccttgcaaagcctaactcagcctatcctattcccatcccta 21524089  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 11837140 - 11837192
Alignment:
Q  51 caggccagactcagaccttacaaagcctagctcgacctaacatattcacatcc 103  Q
    |||||||| || ||||||| |||||||||||||| |||||| ||||| |||||    
T  11837140 caggccaggcttagaccttgcaaagcctagctcggcctaacctattctcatcc 11837192  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 5880115 - 5880059
Alignment:
Q  50 gcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    |||||||||||| || |||| ||||||||||||||||||| | |||||| |||||||    
T  5880115 gcaggccagacttaggccttgcaaagcctagctcgacctagcctattcatatcccta 5880059  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 24556851 - 24556909
Alignment:
Q  48 tggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    ||||||||||| || |||||||  |||||||||||||||||| | ||||| ||||||||    
T  24556851 tggcaggccaggcttagaccttgtaaagcctagctcgacctagcctattcccatcccta 24556909  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 53209 - 53278
Alignment:
Q  37 ttcaaaagaattggcaggccagactcagaccttacaaagcctagctcgacctaacatattcacatcccta 106  Q
    ||||||| |||||||||| ||| ||||| |||| |||||||||||||| |||| | ||||  ||||||||    
T  53209 ttcaaaaaaattggcaggtcaggctcaggccttgcaaagcctagctcggcctagcctattatcatcccta 53278  T

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