View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9991_high_6 (Length: 447)

Name: NF9991_high_6
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9991_high_6
NF9991_high_6
[»] chr7 (2 HSPs)
chr7 (5-422)||(12333203-12333621)
chr7 (5-422)||(6951114-6951532)
[»] chr4 (2 HSPs)
chr4 (5-422)||(18186557-18186975)
chr4 (327-377)||(32097845-32097895)
[»] chr3 (6 HSPs)
chr3 (5-422)||(13241954-13242372)
chr3 (239-422)||(54835364-54835547)
chr3 (155-223)||(31898036-31898104)
chr3 (155-223)||(31913745-31913813)
chr3 (155-223)||(31947393-31947461)
chr3 (385-422)||(29007060-29007097)
[»] chr5 (2 HSPs)
chr5 (289-422)||(39507281-39507414)
chr5 (12-230)||(39507422-39507653)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-192)||(250843-251011)
[»] chr1 (1 HSPs)
chr1 (49-116)||(42762710-42762777)
[»] chr6 (1 HSPs)
chr6 (40-72)||(1132369-1132401)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 422
Target Start/End: Original strand, 12333203 - 12333621
Alignment:
Q  5 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333203 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 12333302  T
Q  105 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 204  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333303 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 12333402  T
Q  205 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 303  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333403 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 12333502  T
Q  304 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333503 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 12333602  T
Q  404 agataggaagaaaagagaa 422  Q
    |||||||||||||||||||    
T  12333603 agataggaagaaaagagaa 12333621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 422
Target Start/End: Complemental strand, 6951532 - 6951114
Alignment:
Q  5 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951532 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 6951433  T
Q  105 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 204  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951432 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 6951333  T
Q  205 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 303  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951332 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 6951233  T
Q  304 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6951232 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaataaaacttcatacaccttaaagttcata 6951133  T
Q  404 agataggaagaaaagagaa 422  Q
    |||||||||||||||||||    
T  6951132 agataggaagaaaagagaa 6951114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 422
Target Start/End: Original strand, 18186557 - 18186975
Alignment:
Q  5 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186557 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 18186656  T
Q  105 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 204  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186657 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 18186756  T
Q  205 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 303  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186757 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 18186856  T
Q  304 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186857 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 18186956  T
Q  404 agataggaagaaaagagaa 422  Q
    |||||||||||||||||||    
T  18186957 agataggaagaaaagagaa 18186975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 32097845 - 32097895
Alignment:
Q  327 taaatggactctctatcaacccacttaaataaaaatatcaaataggaaatg 377  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32097845 taaatggactctctatcaacctacttaaataaaaatatcaaataggaaatg 32097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 422
Target Start/End: Complemental strand, 13242372 - 13241954
Alignment:
Q  5 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242372 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 13242273  T
Q  105 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 204  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242272 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 13242173  T
Q  205 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 303  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242172 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 13242073  T
Q  304 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242072 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 13241973  T
Q  404 agataggaagaaaagagaa 422  Q
    |||||||||||||||||||    
T  13241972 agataggaagaaaagagaa 13241954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 239 - 422
Target Start/End: Complemental strand, 54835547 - 54835364
Alignment:
Q  239 agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54835547 agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactct 54835448  T
Q  339 ctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcataagataggaagaaaagagaa 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54835447 ctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcataagataggaagaaaagagaa 54835364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 31898104 - 31898036
Alignment:
Q  155 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgattccctgtgctc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31898104 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgactccctgtgctc 31898036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 31913813 - 31913745
Alignment:
Q  155 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgattccctgtgctc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31913813 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgactccctgtgctc 31913745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 31947461 - 31947393
Alignment:
Q  155 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgattccctgtgctc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31947461 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgactccctgtgctc 31947393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 422
Target Start/End: Original strand, 29007060 - 29007097
Alignment:
Q  385 atacaccttaaagttcataagataggaagaaaagagaa 422  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29007060 atacaccttaaagttcataagataggaagaaaagagaa 29007097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 289 - 422
Target Start/End: Complemental strand, 39507414 - 39507281
Alignment:
Q  289 ctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatac 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39507414 ctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatac 39507315  T
Q  389 accttaaagttcataagataggaagaaaagagaa 422  Q
    ||||||||||||||||||||||||||||||||||    
T  39507314 accttaaagttcataagataggaagaaaagagaa 39507281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 39507653 - 39507422
Alignment:
Q  12 ataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgttttaaaaa 111  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  39507653 ataggtagcaatattatggctatacggactcgaaccgtagagcttctcggtaaaatagattaaactattattatcaaaatgatttgaattgttttaaaaa 39507554  T
Q  112 cccaacgtgcannnnnnnnn-------------gcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaag 198  Q
    |||||| ||||                      ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  39507553 cccaacatgcattttttttttttttttttttttgcattgggctttttcattaaccgatagaaatatcaattagtttaccatcttttttctttacacaaag 39507454  T
Q  199 aaaaaggaaatgattccctgtgctctgattta 230  Q
    ||||||||||||||||||||||||||||||||    
T  39507453 aaaaaggaaatgattccctgtgctctgattta 39507422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 250843 - 251011
Alignment:
Q  22 atattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgttttaaaaacccaacgtgc 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||    
T  250843 atattagggctatacggattcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaactgtttcaaagacccaacatgc 250942  T
Q  122 annnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttac 192  Q
    |         |||||||||| |||||| |||||||  ||| |||| |||||| |||||  |||||||||||    
T  250943 a--tttttttgcattgggctctttcataaactgatttaaagatcagttagtccaccatagtttttctttac 251011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 42762777 - 42762710
Alignment:
Q  49 tagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgttttaaaaacccaa 116  Q
    ||||| |||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||    
T  42762777 tagactttctaggtaaaacaaataaaattattattatcaaaatgatttgaattgttttaaaaatccaa 42762710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 1132369 - 1132401
Alignment:
Q  40 ctcgaaccgtagaccttctcggtaaaacagatc 72  Q
    |||||||||||||||||||||||||||||||||    
T  1132369 ctcgaaccgtagaccttctcggtaaaacagatc 1132401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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