View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_high_8 (Length: 425)
Name: NF9991_high_8
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 21 - 409
Target Start/End: Complemental strand, 42164727 - 42164338
Alignment:
| Q |
21 |
tgcatggggttgcgcttgggcgtataaacaacaactccaaaacacttcatacaaatctattgcgattggacgcaaatcttttgcgcctaggcttaaattg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42164727 |
tgcatggggttgcgcttgggcgtataaacaacaactccaaaacacttcatacaaatctattgcgattggacgcaaatcttttgcgcctaggcttaaattg |
42164628 |
T |
|
| Q |
121 |
gaaaaatgactagaaaatatattaagacattataagggttaagaagtggaggttcaaggtttaaattccgacaaagagaaaagactaacacaacaaaaca |
220 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42164627 |
gaaaaatgactagcaaatatattaagacattataagagttaagaagtggaggtccaaggtttaaattccgacaaagagaaaagactaacacaacaaaaca |
42164528 |
T |
|
| Q |
221 |
attaactactaatatttgtcattaaaaaataattgtgagagaggtaatacttgatatttacaacaacaaaaaattataggatgactacattgattgaaga |
320 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42164527 |
ataaactactaatatttgtcattaaaaaataattgtgagagaggtgatacttgatatttacaacaacaaaaaattataggatgactacattgattgaaga |
42164428 |
T |
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| Q |
321 |
ttttggtttaaaaaatcgaactcctt-ttttcagtttgagatatttgatttattcattactttattacttttctcaattccttttgcttg |
409 |
Q |
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|||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42164427 |
ttttggtttaaaaagtcgaactcctttttttaagtttgagatatttgatttattcattactttattacttttctcaattccttttgcttg |
42164338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 16632981 - 16632949
Alignment:
| Q |
217 |
aacaattaactactaatatttgtcattaaaaaa |
249 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
16632981 |
aacaattaactactaatatttgccattaaaaaa |
16632949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 3294541 - 3294509
Alignment:
| Q |
217 |
aacaattaactactaatatttgtcattaaaaaa |
249 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
3294541 |
aacaattaattactaatatttgtcattaaaaaa |
3294509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 13040007 - 13039975
Alignment:
| Q |
217 |
aacaattaactactaatatttgtcattaaaaaa |
249 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
13040007 |
aacaattaactattaatatttgtcattaaaaaa |
13039975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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