View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_low_10 (Length: 424)
Name: NF9991_low_10
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 10546590 - 10546237
Alignment:
| Q |
17 |
aacattaggcaccctttccacttgaagaacattaatagataatgtgttaatagcatttgatcgacacctagaagataaaactccatgaaaaaactgtgtt |
116 |
Q |
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| T |
10546590 |
aacattaggcaccccttccacttgaaaaccattaatagataatgtgttaatagcatttgatcgacacctagaagataaaactccatgaaaaaactgtgtt |
10546491 |
T |
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| Q |
117 |
agcatcaccttctattaaccagcacaatcttgtgttttgccaatgcataccagaattaatttttgccaaagtataagcttgcaaataaggaatgaagctc |
216 |
Q |
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| T |
10546490 |
agcttcaccttctattaaccagcacgatcttgtgttttgccaatgcataccggaattaatttttgccaaagtataagcttgcaaataaggaatgaagctc |
10546391 |
T |
|
| Q |
217 |
ctccacctcc-tttaattctaaatcgaattcatcccccttatgatctagagaagaaatgcgttcttttacattaagaattctacctttagtattctaaga |
315 |
Q |
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| T |
10546390 |
ctccacctccttttaattctaaatcgaattcttcccccttatgatctagagaagaaatgtgttctttcacattaagaattctacctttagtattctaaga |
10546291 |
T |
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| Q |
316 |
atgttgctaatgccaaattttcaaactagtttttatcaacttgaatttttcttt |
369 |
Q |
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| T |
10546290 |
atgttgctaatgccaaattttcaaactagtttttatcaacttgaatttttcttt |
10546237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 10545830 - 10545781
Alignment:
| Q |
361 |
tttttcttttaacatctgccctccccatcttgtaacttgaaacgaatgtc |
410 |
Q |
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| T |
10545830 |
tttttcttttaacatgtgccctccccatcttgtaacttgaaacgaatgtc |
10545781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 20393261 - 20393333
Alignment:
| Q |
115 |
ttagcatcaccttctattaaccagcacaatcttgtgttttgccaatgcataccagaattaatttttgccaaag |
187 |
Q |
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||||||||||| ||| | |||||||||||||||| || | ||| ||||||| |||||||||| ||||||||| |
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| T |
20393261 |
ttagcatcaccctctttcaaccagcacaatcttgaattctaccactgcatactagaattaattcttgccaaag |
20393333 |
T |
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