View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_low_12 (Length: 409)
Name: NF9991_low_12
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 26879868 - 26880261
Alignment:
| Q |
1 |
acattgtgtcgatttctattgatggcacatctgcaactactatcattgttgacaggtacatgatcaattttatttttatgtgaatcagtgttgttaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26879868 |
acattgtgtcgatttctattgatggcacatctgcaactactatcattgttgacaggtacatgatcaattttatttttatgtgaatcagtgttgttaaata |
26879967 |
T |
|
| Q |
101 |
gtggctatggtagtgctatagtgtagcaaaatttaaacgaatcgctattgtcatgtgatactctacttagtacaaaatattgtcaaattgcggttaaagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26879968 |
gtggctatggtagtgctatagtgtagcaaaatttaaacgaatcgctattgtcatgtgatacactacttagtacaaaatattgtcaaattgcggttaaagc |
26880067 |
T |
|
| Q |
201 |
aatgctatagcacagttgcgttgcagaatttgagcaaattgnnnnnnnnccatgatttacgactgcagcactaatgtgaatctacttaaagattgtattt |
300 |
Q |
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| T |
26880068 |
aatgctatagcacagttgcgttgcagaatttgagcaaatcg-tttttttccatgatttacgactgcagcactaaggtgaatctagttaaagattgtattt |
26880166 |
T |
|
| Q |
301 |
gaattccgaagtgggaatgttgtactgcagtgacacaggagaaccgttgtggagacctttactttacaatgagagctgtcctgatgcactacctg |
395 |
Q |
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| T |
26880167 |
gaattctgaagtgggaatgttgtactgcagtgacacaggagaaccgttgtggagacctttactttacaatgagagctgtcctgatgcactacctg |
26880261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 2722280 - 2722156
Alignment:
| Q |
117 |
tatagtgtagcaaaatttaaacgaatcgctattgtcatgtgatac--tctacttagtacaaaatattgtcaaattgcggttaaagcaatgctatagcaca |
214 |
Q |
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|||| ||||||||||||||||| ||| |||||| ||||||||| |||| |||||||||||||||||| ||| | || || || |||||||||||| |
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| T |
2722280 |
tataatgtagcaaaatttaaacaaatgaatattgttatgtgatacactctatttagtacaaaatattgtcgaatagtggctattgcgatgctatagcact |
2722181 |
T |
|
| Q |
215 |
gttgcgttgcagaatttgagcaaat |
239 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
2722180 |
tttgcgttgcagaatttgatcaaat |
2722156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 11257695 - 11257791
Alignment:
| Q |
97 |
aatggtggctatggtagtgctatagtgtagcaaaatttaaacgaatcgctattgtcatgtgatactctacttagtacaaaatattgtcaaattgcgg |
193 |
Q |
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| T |
11257695 |
aatggcggctatagcagtgctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaatagcgg |
11257791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 431014 - 431084
Alignment:
| Q |
163 |
ctacttagtacaaaatattgtcaaattgcggttaaagcaatgctatagcacagttgcgttgcagaatttga |
233 |
Q |
| |
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||||||||||||||||||||| |||| |||| || || |||||||||| ||||||| ||||||||||| |
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| T |
431014 |
ctacttagtacaaaatattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaatttga |
431084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 1880128 - 1880080
Alignment:
| Q |
144 |
gctattgtcatgtgatactctacttagtacaaaatattgtcaaattgcgg |
193 |
Q |
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| T |
1880128 |
gctattgttatgtgatactcta-ttagtacaaaatgttgtcaaatagcgg |
1880080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 43391558 - 43391497
Alignment:
| Q |
167 |
ttagtacaaaatattgtcaaattgcggttaaagcaatgctatagcacagttgcgttgcagaa |
228 |
Q |
| |
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|||||||||||| ||||||||| |||| || |||| ||||||||||| ||||| | |||||| |
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| T |
43391558 |
ttagtacaaaatgttgtcaaatggcggctatagcattgctatagcactgttgcatagcagaa |
43391497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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