View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9991_low_19 (Length: 270)

Name: NF9991_low_19
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9991_low_19
NF9991_low_19
[»] chr4 (25 HSPs)
chr4 (1-252)||(7765181-7765432)
chr4 (1-252)||(7786003-7786254)
chr4 (27-252)||(7770990-7771215)
chr4 (27-252)||(7789675-7789900)
chr4 (27-252)||(7237987-7238212)
chr4 (65-246)||(7877344-7877525)
chr4 (94-246)||(7774102-7774254)
chr4 (52-234)||(7822580-7822762)
chr4 (66-241)||(7904657-7904832)
chr4 (27-148)||(45372428-45372549)
chr4 (52-234)||(7800248-7800430)
chr4 (52-234)||(7813091-7813273)
chr4 (58-148)||(48156798-48156888)
chr4 (52-156)||(48891020-48891124)
chr4 (49-148)||(49044600-49044699)
chr4 (55-156)||(7907939-7908040)
chr4 (57-156)||(48862857-48862959)
chr4 (57-155)||(45366582-45366683)
chr4 (49-148)||(33134194-33134296)
chr4 (192-246)||(7908079-7908133)
chr4 (43-148)||(48170957-48171065)
chr4 (43-148)||(48870144-48870249)
chr4 (43-148)||(48885830-48885935)
chr4 (83-148)||(49041509-49041574)
chr4 (65-122)||(49048996-49049053)
[»] chr5 (4 HSPs)
chr5 (25-252)||(1812009-1812230)
chr5 (176-252)||(1811845-1811921)
chr5 (59-156)||(29712832-29712929)
chr5 (83-156)||(29695794-29695867)
[»] chr3 (4 HSPs)
chr3 (22-246)||(11024810-11025034)
chr3 (52-246)||(11015798-11015992)
chr3 (55-148)||(47452278-47452371)
chr3 (27-246)||(11006235-11006454)
[»] chr8 (5 HSPs)
chr8 (39-146)||(12194899-12195006)
chr8 (39-146)||(12439327-12439434)
chr8 (39-142)||(12199905-12200008)
chr8 (39-142)||(12444333-12444436)
chr8 (56-190)||(15348477-15348611)
[»] chr1 (1 HSPs)
chr1 (94-156)||(24309830-24309892)
[»] scaffold0508 (1 HSPs)
scaffold0508 (94-156)||(11915-11977)
[»] chr6 (2 HSPs)
chr6 (27-148)||(21015362-21015483)
chr6 (65-125)||(14193139-14193199)
[»] chr2 (1 HSPs)
chr2 (96-155)||(21426041-21426100)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7765181 - 7765432
Alignment:
Q  1 ataacgctgctcaaagcatggattttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765181 ataacgctgctcaaagcatggatcttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaa 7765280  T
Q  101 gttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctcta 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  7765281 gttatggttttctattatctctgatcctcactttgcaaattcacatttccaacttaaccatgcaaaacacactcgtagatttttatgcatttcagctcta 7765380  T
Q  201 tctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcctg 252  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  7765381 tctcctgaaattcgatcaattgattttgatgcatttcttaacgatgctcctg 7765432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7786003 - 7786254
Alignment:
Q  1 ataacgctgctcaaagcatggattttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaa 100  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||||  |||||||||||| |||||||| |||||  || | ||||| ||| |||||||    
T  7786003 ataacgttgctcaaagcatggatcttcctcaagaactgatccttcaaactctgttgaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaa 7786102  T
Q  101 gttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctcta 200  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||    
T  7786103 gctatggatttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccttacaaaacacactcgtagatttttatgcatttcagctcta 7786202  T
Q  201 tctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcctg 252  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  7786203 tctcctgaaattcgatcaattgattttgatgcatttcttaacgatgctcctg 7786254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 252
Target Start/End: Original strand, 7770990 - 7771215
Alignment:
Q  27 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 126  Q
    ||||| ||||| || || ||| ||||| ||||||| ||||||||||||||  ||  |||||| ||| |||||||||  ||||||||| ||||||||||||    
T  7770990 cctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatc 7771089  T
Q  127 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 226  Q
    |||| |||| |||||||||||| ||||||  |  |||||| |||||| |||||||||||||||| ||| ||| ||||| |||||||||||| ||||||||    
T  7771090 ctcactttgaaaattcacattttcaacttgcctctgcaacacacacttgtagatttttatgcatatcaactcaatctcatgaaattcgatctatagattt 7771189  T
Q  227 tgatgcatttcttaacgatgctcctg 252  Q
    ||| |||||||||||||||| |||||    
T  7771190 tgaagcatttcttaacgatgatcctg 7771215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 27 - 252
Target Start/End: Original strand, 7789675 - 7789900
Alignment:
Q  27 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 126  Q
    ||||| |||||||| || ||| ||||| ||||||| ||||||||||||||  ||  |||||| ||| |||||||||  ||||||||| ||||||| ||||    
T  7789675 cctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatc 7789774  T
Q  127 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 226  Q
    |||| |||| |||||||||||| ||||||  |   ||||| |||||| ||||||||||||| || ||| ||| ||||| ||||||| |||| ||||||||    
T  7789775 ctcactttgaaaattcacattttcaacttgcctccgcaacacacacttgtagatttttatgtatatcaactcaatctcatgaaatttgatctatagattt 7789874  T
Q  227 tgatgcatttcttaacgatgctcctg 252  Q
    ||| |||||||||||||||| |||||    
T  7789875 tgaagcatttcttaacgatgatcctg 7789900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 7238212 - 7237987
Alignment:
Q  27 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 126  Q
    ||||| ||||| ||||| ||| ||||| ||||||| || |||||||||||  |   |||||| ||  |||||||||  ||||||||| |||||||||| |    
T  7238212 cctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgacc 7238113  T
Q  127 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 226  Q
    |||| |||||||||||||||||||||| || |  ||||||||| |||||||| ||||||||||| ||| || |||||| |||||||||||| || |||      
T  7238112 ctcactttgcaaattcacatttccaacatacctctgcaacgcatactcgtaggtttttatgcatatcacctttatctcatgaaattcgatcaatcgatcc 7238013  T
Q  227 tgatgcatttcttaacgatgctcctg 252  Q
    ||| |||||||||||||||| |||||    
T  7238012 tgaagcatttcttaacgatgatcctg 7237987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 7877344 - 7877525
Alignment:
Q  65 ggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgca 164  Q
    ||||||||||||  ||  |||||| |||||||||||| ||||||||||| |||||||||||||  | ||||||||||||||||| ||||| | |    ||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccaccaca 7877443  T
Q  165 acgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatg 246  Q
    |||||||||| |||| || | ||||| ||| ||||||||| |||||||||||| |||| |||||| ||||||||||||||||    
T  7877444 acgcacactcctagaattatgtgcatatcacctctatctcatgaaattcgatcaataggttttgaagcatttcttaacgatg 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 7774254 - 7774102
Alignment:
Q  94 tttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttc 193  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||||||||||| ||||| | |    |||||||||||| |||| || | ||||| ||    
T  7774254 tttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccaccacaacgcacactcctagaattatgtgcatatc 7774155  T
Q  194 agctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatg 246  Q
    | ||||||||| |||||||||||| |||| |||||| ||||||||||||||||    
T  7774154 atctctatctcatgaaattcgatctataggttttgaagcatttcttaacgatg 7774102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 7822580 - 7822762
Alignment:
Q  52 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 151  Q
    |||||||||| |||||||||| |||  ||  |||||||||  ||||||| | |||||||||| ||||||||||||| || |||||||||||||| || ||    
T  7822580 tgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaattcacaatttca 7822679  T
Q  152 acttaacca-tgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcat 234  Q
    | || |||| |||||| || ||||||||| || || || | ||| || |||||| |||||||||||| |||||| |||||||||    
T  7822680 a-ttcaccactgcaacacatactcgtagaattataggcttatcatctttatctcatgaaattcgatctatagatgttgatgcat 7822762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 241
Target Start/End: Original strand, 7904657 - 7904832
Alignment:
Q  66 gtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaa 165  Q
    |||||||||||  ||  |||||| ||  |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| | |   |||     
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaactcaccgccgcag 7904756  T
Q  166 cgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaa 241  Q
    |  |||||| |||| || | ||||| |||  |||||||| |||||||| |||  || ||||||| |||||||||||    
T  7904757 ctaacactcctagaattatgtgcatatcatatctatctcatgaaattcaatctttatattttgaagcatttcttaa 7904832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 45372549 - 45372428
Alignment:
Q  27 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 126  Q
    ||||| ||| |||| |||||| ||||  | ||||| ||||||||||||||  ||  |||||| ||  |||||||||  ||||||||||||||||||||||    
T  45372549 cctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatc 45372450  T
Q  127 ctcaatttgcaaattcacattt 148  Q
    |||| |||||||||||||||||    
T  45372449 ctcattttgcaaattcacattt 45372428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 7800248 - 7800430
Alignment:
Q  52 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 151  Q
    |||||||||| |||||||||| |||  ||  |||||||||  ||||||| | |||||||||| || |||||||||| |  |||||||||||||| || ||    
T  7800248 tgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaattcacaatttca 7800347  T
Q  152 acttaacca-tgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcat 234  Q
    | || |||| |||||| || ||||||||| || || || | ||| || |||||| |||||||||||| |||||| |||||||||    
T  7800348 a-ttcaccactgcaacacatactcgtagaattataggcttatcatctttatctcatgaaattcgatctatagatgttgatgcat 7800430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 7813091 - 7813273
Alignment:
Q  52 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 151  Q
    |||||||||| |||||||||| |||  ||  |||||||||  ||||||| | |||||||||| |||||||||| || || |||||||| ||||| || ||    
T  7813091 tgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaagtcacaatttca 7813190  T
Q  152 acttaacca-tgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcat 234  Q
    | || |||| |||||| || ||||||||  || || || | ||| || |||||| |||||||||||| |||||| |||||||||    
T  7813191 a-ttcaccactgcaacacatactcgtaggattataggcttatcatctttatctcatgaaattcgatcgatagatgttgatgcat 7813273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 48156888 - 48156798
Alignment:
Q  58 ggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 148  Q
    |||||||||||||||||||  ||  |||||||||| |||||||||  ||||||||| ||||||| ||| |||| ||||||||||| |||||    
T  48156888 ggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaattctcattt 48156798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 48891020 - 48891124
Alignment:
Q  52 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 151  Q
    ||||||||||| |||| ||||||||  ||  |||||| ||| |||||||||  ||||||||| || |||| |||||||| ||||||||||| ||||| ||    
T  48891020 tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttca 48891119  T
Q  152 actta 156  Q
    |||||    
T  48891120 actta 48891124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 49044699 - 49044600
Alignment:
Q  49 ttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 148  Q
    ||||| ||||||| || |||| |||||| |||  |||||||||  |||||||||||||||||||| |||||||| |  | || |||||||||||||||||    
T  49044699 ttctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattt 49044600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 7907939 - 7908040
Alignment:
Q  55 tgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaact 154  Q
    ||||||| ||||||||||||||   |  ||||||||   || |||||| |||||||||| ||||||||| ||| || ||||||||||||||||| |||||    
T  7907939 tgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaact 7908038  T
Q  155 ta 156  Q
    ||    
T  7908039 ta 7908040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 48862857 - 48862959
Alignment:
Q  57 aggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctct---gatcctcaatttgcaaattcacatttccaac 153  Q
    ||||||||||||||||||||  |   |||||| ||| |||| ||||  ||||||||| ||||||||   |||||||| ||||||||||||||||| ||||    
T  48862857 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaac 48862956  T
Q  154 tta 156  Q
    |||    
T  48862957 tta 48862959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 45366683 - 45366582
Alignment:
Q  57 aggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc---tgatcctcaatttgcaaattcacatttccaac 153  Q
    |||||||| |||||||||||  ||  |||||||||| |||||||||  ||||||||| |||||||   |||| | || ||||||||||||||||| ||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaattcacattttcaac 45366584  T
Q  154 tt 155  Q
    ||    
T  45366583 tt 45366582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 33134296 - 33134194
Alignment:
Q  49 ttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc---tgatcctcaatttgcaaattcaca 145  Q
    |||||||||| |||||||||||||||||  |   |||||| ||| ||||||||   || |||||| |||||||   ||||||||| ||||||||||||||    
T  33134296 ttctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcaca 33134197  T
Q  146 ttt 148  Q
    |||    
T  33134196 ttt 33134194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 7908079 - 7908133
Alignment:
Q  192 tcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatg 246  Q
    ||| ||||||||| ||||| |||||| ||||||||| | ||||||||||||||||    
T  7908079 tcaactctatctcatgaaactcgatctatagattttaaagcatttcttaacgatg 7908133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 48171065 - 48170957
Alignment:
Q  43 ttcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc---tgatcctcaatttgcaaa 139  Q
    ||||| ||||| |||||||| |||||||||||||  ||  |||||| ||  |||||||||  |||||| || |||||||   ||||||||| ||||||||    
T  48171065 ttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaa 48170966  T
Q  140 ttcacattt 148  Q
    ||| |||||    
T  48170965 ttcgcattt 48170957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 48870144 - 48870249
Alignment:
Q  43 ttcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattc 142  Q
    ||||| ||||| ||||| |||||||||| |||||  |   |||||| ||| |||||||||  ||||||| | ||||||| ||||| |  |||||||||||    
T  48870144 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48870243  T
Q  143 acattt 148  Q
    ||||||    
T  48870244 acattt 48870249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 48885830 - 48885935
Alignment:
Q  43 ttcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattc 142  Q
    ||||| ||||| ||||| |||||||||| |||||  |   |||||| ||| |||||||||  ||||||| | ||||||| ||||| |  |||||||||||    
T  48885830 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48885929  T
Q  143 acattt 148  Q
    ||||||    
T  48885930 acattt 48885935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 49041574 - 49041509
Alignment:
Q  83 tttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 148  Q
    |||||| ||| |||| ||||  ||||||||| ||||||||||||| || ||||||||||| |||||    
T  49041574 tttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcattt 49041509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 49049053 - 49048996
Alignment:
Q  65 ggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctct 122  Q
    ||||| |||||| |||  |||||||||  |||||||||||||||||||| ||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 1812009 - 1812230
Alignment:
Q  25 ttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctga 124  Q
    ||||||| ||||||||| ||||| || ||||||||||||| ||||||| |||| ||  || ||| ||  |||||||||||||||||||| |||||||  |    
T  1812009 ttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctcaaa 1812108  T
Q  125 tcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagat 224  Q
    ||| || ||||||||||  ||||| |||||||      |||| ||||||| ||||||||||||||||||||||  ||||||| |||||||| | || |||    
T  1812109 tccccactttgcaaattatcattttcaactta------caacacacactcttagatttttatgcatttcagcttaatctcctcaaattcgacctatcgat 1812202  T
Q  225 tttgatgcatttcttaacgatgctcctg 252  Q
    |||||||||||||||||||||| |||||    
T  1812203 tttgatgcatttcttaacgatgttcctg 1812230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 1811921 - 1811845
Alignment:
Q  176 tagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcctg 252  Q
    ||||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||| |||||    
T  1811921 tagatttttatacatttcaactttatctcctgaaattcgatctatcgattttgatgcatttcttaacgatgttcctg 1811845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 29712929 - 29712832
Alignment:
Q  59 gttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 156  Q
    ||||||||||||||||||  |   |||||||||| |||||||||||||||||||| |||||||| |  || | || |||||||||||||| |||||||    
T  29712929 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 29712832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 29695794 - 29695867
Alignment:
Q  83 tttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 156  Q
    |||||| ||| |||||||||||||||| ||| |||| ||| | ||||| ||||||||||||||||| |||||||    
T  29695794 tttcaaatgcgtttgtaagttatggttatctcttatatctcaacctcactttgcaaattcacattttcaactta 29695867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 11025034 - 11024810
Alignment:
Q  22 attttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc 121  Q
    |||| ||||| ||| ||||||| ||| |  |||||||||||||||||||||||||| ||  |||||| ||| ||||||||| ||||||  || |||||||    
T  11025034 atttgcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctc 11024935  T
Q  122 tgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccata 221  Q
    ||||| | | |||||||| || |||||  |||||  || |||||| ||||||  |||| || | | ||| ||| ||||| |||  |||| ||||||||||    
T  11024934 tgatcataactttgcaaaatcgcattttgaactttcccctgcaacacacactaatagaattgtgttcatgtcaactctagctctggaaactcgatccata 11024835  T
Q  222 gattttgatgcatttcttaacgatg 246  Q
    |||||||| ||||  ||||||||||    
T  11024834 gattttgaagcatcgcttaacgatg 11024810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 11015992 - 11015798
Alignment:
Q  52 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 151  Q
    |||||||||||||||||||||||||| ||  |||||| ||| ||||||||| || |||  || |||||||||||| | | |||||||| || |||||  |    
T  11015992 tgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctgatcataactttgcaaaatcgcattttga 11015893  T
Q  152 acttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatg 246  Q
    ||||  |  |||||| ||||||  |||| || | | ||| ||| ||||| ||| ||||| ||||||||| |||||||| || |  ||||||||||    
T  11015892 actttccactgcaacacacactaatagaattgtgttcatgtcaactctagctcttgaaactcgatccattgattttgaagcgtcgcttaacgatg 11015798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 47452371 - 47452278
Alignment:
Q  55 tgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 148  Q
    ||||||| ||||||||||||||  ||   ||||||||||||| ||||| |||||||||| |||||||||||||||  ||||||||  |||||||    
T  47452371 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattt 47452278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 11006454 - 11006235
Alignment:
Q  27 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 126  Q
    ||||| ||| ||||||| ||| |  |||||||||| ||||||||||| ||  ||  |||||||||  ||||||||| ||||||  || ||||||||||||    
T  11006454 cctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatc 11006355  T
Q  127 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 226  Q
    |||| |||||||| || |||||  | |||  |  |  ||| ||||||  |||| || | | ||| ||| ||| | ||| |||||||||||||||||||||    
T  11006354 ctcactttgcaaaatcgcattttgacctttccactagaacacacactaatagaattgtgttcatgtcaactccagctcttgaaattcgatccatagattt 11006255  T
Q  227 tgatgcatttcttaacgatg 246  Q
    ||| ||||  ||||||||||    
T  11006254 tgaagcatcgcttaacgatg 11006235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 12194899 - 12195006
Alignment:
Q  39 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 138  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||||||||||||| |||||| ||| ||||||||||||| || |||||||    
T  12194899 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaa 12194998  T
Q  139 attcacat 146  Q
    ||||||||    
T  12194999 attcacat 12195006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 12439327 - 12439434
Alignment:
Q  39 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 138  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||||||||||||| |||||| ||| ||||||||||||| || |||||||    
T  12439327 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaa 12439426  T
Q  139 attcacat 146  Q
    ||||||||    
T  12439427 attcacat 12439434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 12199905 - 12200008
Alignment:
Q  39 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 138  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||  ||||||||| |||||||||| |||||||||||||||| |||||||    
T  12199905 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaa 12200004  T
Q  139 attc 142  Q
    ||||    
T  12200005 attc 12200008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 12444333 - 12444436
Alignment:
Q  39 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 138  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||  ||||||||| |||||||||| |||||||||||||||| |||||||    
T  12444333 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaa 12444432  T
Q  139 attc 142  Q
    ||||    
T  12444433 attc 12444436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 15348477 - 15348611
Alignment:
Q  56 gaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactt 155  Q
    |||||||||||||||||||||  ||  |||||| ||| |||||||||  ||||||||| |||||||||||||| | || |||||||||||||| ||| ||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 15348576  T
Q  156 aaccatgcaacgcacactcgtagatttttatgcat 190  Q
    | |   ||||| |||||||||||| |||| |||||    
T  15348577 accgccgcaacacacactcgtagaattttgtgcat 15348611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 24309830 - 24309892
Alignment:
Q  94 tttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 156  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||    
T  24309830 tttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaactta 24309892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 11915 - 11977
Alignment:
Q  94 tttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 156  Q
    ||||||||| |||||||||| |||||||||||  ||| ||||||||||||||||| |||||||    
T  11915 tttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaactta 11977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 21015362 - 21015483
Alignment:
Q  27 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 126  Q
    ||||||||| ||||||| | | || |||||||||||||||| | ||||||  ||  |||||||||  |||||||||||| ||||||| |||||||| |      
T  21015362 cctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaa 21015461  T
Q  127 ctcaatttgcaaattcacattt 148  Q
    | || ||||||| |||||||||    
T  21015462 cccactttgcaatttcacattt 21015483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 14193199 - 14193139
Alignment:
Q  65 ggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgat 125  Q
    ||||||||||||||||| |||||| ||  |||||||||| ||| ||||| |||||| ||||    
T  14193199 ggtgaagtctctcttaggtttcaaatgtgtttgtaagttttggctttctcttatctttgat 14193139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 21426041 - 21426100
Alignment:
Q  96 tgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactt 155  Q
    |||||||||||| ||||||| |||||| ||||||| ||| ||| ||||||||| ||||||    
T  21426041 tgtaagttatggctttctatcatctctcatcctcatttttcaacttcacattttcaactt 21426100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University