View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_low_20 (Length: 265)
Name: NF9991_low_20
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 28730237 - 28730475
Alignment:
| Q |
9 |
agcacagactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcatatagttttacttca |
108 |
Q |
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| T |
28730237 |
agcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaacttattaactacaaatttcatatagttttacttca |
28730336 |
T |
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| Q |
109 |
gcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcat |
208 |
Q |
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| T |
28730337 |
gcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcat |
28730436 |
T |
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| Q |
209 |
aggagacacacctgttgcagcagtgacatcagcagcaca |
247 |
Q |
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| T |
28730437 |
gggagacacacctgttgcagcagtgacatcagcagcaca |
28730475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 33078592 - 33078556
Alignment:
| Q |
57 |
atgaacaacagtgtaaacttattaacgacaaatttca |
93 |
Q |
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| T |
33078592 |
atgaacaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
110 |
cagagaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaat |
181 |
Q |
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| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 38120660 - 38120901
Alignment:
| Q |
9 |
agcacagactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcatatagttttacttca |
108 |
Q |
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|||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || || |||||| |
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| T |
38120660 |
agcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaacttattaactacaaatttcatagagattcacttca |
38120759 |
T |
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| Q |
109 |
gcagagaatgaagtaaatcgcaatct---tcgtcatcatcgaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgagg |
205 |
Q |
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| T |
38120760 |
gcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgagg |
38120859 |
T |
|
| Q |
206 |
cataggagacacacctgttgcagcagtgacatcagcagcaca |
247 |
Q |
| |
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| T |
38120860 |
catgggagacacacctgctgcagtagtgacatcagcagcaca |
38120901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 247
Target Start/End: Complemental strand, 38609401 - 38609222
Alignment:
| Q |
68 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
167 |
Q |
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||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38609401 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38609302 |
T |
|
| Q |
168 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcaca |
247 |
Q |
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| T |
38609301 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcaca |
38609222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 247
Target Start/End: Complemental strand, 38794184 - 38794005
Alignment:
| Q |
68 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
167 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38794184 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38794085 |
T |
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| Q |
168 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcaca |
247 |
Q |
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| T |
38794084 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcaca |
38794005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 34592957 - 34592845
Alignment:
| Q |
113 |
agaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcata |
209 |
Q |
| |
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|||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
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| Q |
210 |
ggagacacacctg |
222 |
Q |
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||||||||||||| |
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| T |
34592857 |
ggagacacacctg |
34592845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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