View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_low_21 (Length: 254)
Name: NF9991_low_21
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 6090030 - 6090123
Alignment:
| Q |
27 |
tacaaatctttaaaacaacttgttcacattatgagaatgtattatatgaaatgcaattgtatatttatatattcgttggcatataattaattaa |
120 |
Q |
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| T |
6090030 |
tacaaatttttaaaacaacttgttcacattatgagaatgtattatatgaaatgtaattgtatatttatatattcgttggcatataattaattaa |
6090123 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 6090117 - 6090219
Alignment:
| Q |
140 |
taattaattaaaagttaaacactcaaaaaataaaatttccaatcaacaactaatttattaatcga----ttatttgcacataccggattatttgcacaaa |
235 |
Q |
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| T |
6090117 |
taattaattaaaagttaaacactcaaaa--taaaatttccaatcaacaactaatttattaattgattttttttttgcacgtaccggattatttgcacaaa |
6090214 |
T |
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| Q |
236 |
cacca |
240 |
Q |
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||||| |
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| T |
6090215 |
cacca |
6090219 |
T |
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