View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9991_low_23 (Length: 245)
Name: NF9991_low_23
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_low_23 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4286494 - 4286734
Alignment:
| Q |
1 |
tgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataaaactggtttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286494 |
tgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataaaactggtttaat |
4286593 |
T |
|
| Q |
101 |
aaacagcaacatttatttatgaccacctgtttgatcatgacatacaattaattcatcagtccaccccaaagcacttgagaaggagttgatccaaacaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286594 |
aaacagcaacatttatttatgaccacctgtttgatcatgacatac----aattcatcagtccaccccaaagcacttgagaaggagttgatccaaacaaac |
4286689 |
T |
|
| Q |
201 |
tgaattctacgtcaattcgaaacatcaaaaaatcataaatttgac |
245 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4286690 |
tgaattctacgtcaatttgaaacataaaaaaatcataaatttgac |
4286734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University