View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9991_low_24 (Length: 244)

Name: NF9991_low_24
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9991_low_24
NF9991_low_24
[»] chr4 (4 HSPs)
chr4 (1-163)||(1427597-1427759)
chr4 (141-202)||(17668406-17668467)
chr4 (139-202)||(2588905-2588968)
chr4 (128-171)||(40933222-40933265)
[»] chr7 (5 HSPs)
chr7 (102-202)||(36514500-36514600)
chr7 (128-172)||(5335835-5335879)
chr7 (128-202)||(30200254-30200328)
chr7 (140-202)||(48736194-48736256)
chr7 (140-188)||(25656213-25656261)
[»] chr8 (6 HSPs)
chr8 (139-198)||(2518690-2518749)
chr8 (146-202)||(37256012-37256068)
chr8 (137-195)||(29520582-29520640)
chr8 (128-202)||(30456507-30456580)
chr8 (138-202)||(28300407-28300471)
chr8 (102-166)||(42493635-42493699)
[»] chr5 (2 HSPs)
chr5 (104-202)||(21952240-21952338)
chr5 (145-202)||(9234999-9235056)
[»] chr1 (3 HSPs)
chr1 (128-202)||(40419552-40419626)
chr1 (145-202)||(16273115-16273172)
chr1 (138-202)||(52633467-52633531)
[»] chr6 (3 HSPs)
chr6 (102-163)||(18905773-18905834)
chr6 (131-202)||(33998299-33998370)
chr6 (138-198)||(5129136-5129196)
[»] chr3 (3 HSPs)
chr3 (138-202)||(38054632-38054696)
chr3 (123-202)||(49841519-49841598)
chr3 (126-202)||(36820254-36820330)
[»] chr2 (1 HSPs)
chr2 (130-202)||(9647900-9647972)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1427759 - 1427597
Alignment:
Q  1 ttttatgttgatccagaggccaaactcttgtttattattcgcatcagagggtatgtttatttttgttgtgttcattcagattggattagagtgttagtat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  1427759 ttttatgttgatccagaggccaagctcttgtttattattcgcatcagagggtatgtttatttctgttgtgttgattcagattggattagagtgttagtat 1427660  T
Q  101 ataaagaactaacatgaaattgaattgagtgtagcatagatgagaatgttgcgttgaatgtgt 163  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||    
T  1427659 ataaagaactaacatgaaattgatttaagtgtagcatagatgagaatgttgtgttggatgtgt 1427597  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 17668467 - 17668406
Alignment:
Q  141 tgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||||||||||||||| ||||||||| | |||  |||||||| |||||||||||||||||||    
T  17668467 tgagaatgttgcgttggatgtgtggtaaaactagatgagataagattataaatgacaacatt 17668406  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 2588905 - 2588968
Alignment:
Q  139 gatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||||| ||||||||||| ||||||||| |||||  | | |||||||||| |||||||||||||    
T  2588905 gatgaggatgttgcgttggatgtgtggtaagactagaagggataggattagaaatgacaacatt 2588968  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 40933265 - 40933222
Alignment:
Q  128 agtgtagcatagatgagaatgttgcgttgaatgtgtggttagac 171  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||    
T  40933265 agtgtagcgtagatgaggatgttgcgttgaatgtgtggtaagac 40933222  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 36514600 - 36514500
Alignment:
Q  102 taaagaactaacatgaaattgaattgagtgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacat 201  Q
    |||||||| |||| |||| | |||| ||||||||| ||||||| ||||||||||| ||||||||| ||||| || | ||||| |||| ||| ||||||||    
T  36514600 taaagaaccaacacgaaaataaattaagtgtagcagagatgaggatgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaacat 36514501  T
Q  202 t 202  Q
    |    
T  36514500 t 36514500  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 5335835 - 5335879
Alignment:
Q  128 agtgtagcatagatgagaatgttgcgttgaatgtgtggttagact 172  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||    
T  5335835 agtgtagcagagatgaggatgttgcgttgaatgtgtggtaagact 5335879  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 30200328 - 30200254
Alignment:
Q  128 agtgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||||| ||||||| |||||| |||| ||||||||| ||| |  ||| |||| ||||| |||||||||||||    
T  30200328 agtgtagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacatt 30200254  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 48736256 - 48736194
Alignment:
Q  140 atgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||| ||||||||||||||||||||| |||||  ||||||||  |||| ||||||| |||||    
T  48736256 atgaggatgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacatt 48736194  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 25656261 - 25656213
Alignment:
Q  140 atgagaatgttgcgttgaatgtgtggttagactgaatgagataggatta 188  Q
    ||||||||||||||||||| | ||||| ||||| || ||||||||||||    
T  25656261 atgagaatgttgcgttgaacgagtggtaagactaaaggagataggatta 25656213  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 2518749 - 2518690
Alignment:
Q  139 gatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaa 198  Q
    |||||||||||||| ||| ||||||||| |||||  |||||||||||||| |||||||||    
T  2518749 gatgagaatgttgcattggatgtgtggtaagactagatgagataggattagaaatgacaa 2518690  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 37256068 - 37256012
Alignment:
Q  146 atgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||||||||||| ||||||| ||| |||||||||| |||| |||||||| ||||    
T  37256068 atgttgcgttgaatgagtggttaaactaaatgagatagaattagaaatgacaccatt 37256012  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 29520582 - 29520640
Alignment:
Q  137 tagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatga 195  Q
    |||||||| ||||||||||| ||||||||| |||||  ||| |||||||||| ||||||    
T  29520582 tagatgaggatgttgcgttggatgtgtggtaagactagatgggataggattagaaatga 29520640  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 30456580 - 30456507
Alignment:
Q  128 agtgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||||| ||||||| ||||||||||| ||||||||| ||||  |||| ||||| |||| ||||||| |||||    
T  30456580 agtgtagcagagatgaggatgttgcgttggatgtgtggtaagac-caatgggatagaattagaaatgacgacatt 30456507  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 28300471 - 28300407
Alignment:
Q  138 agatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||| |||||| |||| |||||| || |||||  |||||||| ||||| |||||||||||||    
T  28300471 agatgaggatgttgtgttggatgtgtagtaagactagatgagataagattagaaatgacaacatt 28300407  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 42493699 - 42493635
Alignment:
Q  102 taaagaactaacatgaaattgaattgagtgtagcatagatgagaatgttgcgttgaatgtgtggt 166  Q
    |||||||| |||| |||| | |||| ||||||||| ||||||| |||||||||||  ||||||||    
T  42493699 taaagaaccaacaagaaaataaattaagtgtagcaaagatgaggatgttgcgttggttgtgtggt 42493635  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 21952240 - 21952338
Alignment:
Q  104 aagaactaacatgaaattgaattgagtgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||||| |||| ||| || |||| ||||||| | ||||||| ||||||||||| ||||||||| |||||  | |||||| ||||| |||||||| ||||    
T  21952240 aagaaccaacacgaacttaaattaagtgtagaaaagatgaggatgttgcgttgcatgtgtggtaagactagacgagataagattagaaatgacagcatt 21952338  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 9234999 - 9235056
Alignment:
Q  145 aatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||||||| ||| ||||||||| |||||  | | ||||||||||||||||||||||||    
T  9234999 aatgttgcattggatgtgtggtaagactagacgggataggattataaatgacaacatt 9235056  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 40419552 - 40419626
Alignment:
Q  128 agtgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||||| ||||||| ||| |||||||||||| |||| | |||  ||||||||| |||| |||||||||||||    
T  40419552 agtgtagcagagatgaggatggtgcgttgaatgtatggtaaaactagatgagatagaattagaaatgacaacatt 40419626  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 16273172 - 16273115
Alignment:
Q  145 aatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||||||||||| ||||||||| |||||  |||||||  ||||| |||||||||||||    
T  16273172 aatgttgcgttggatgtgtggtaagactagatgagatgagattagaaatgacaacatt 16273115  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 52633531 - 52633467
Alignment:
Q  138 agatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||| ||||||||||||||||| ||| |||||  ||| |||| || || |||||||||||||    
T  52633531 agatgaggatgttgcgttgaatgtgcggtaagactagatgtgataagactagaaatgacaacatt 52633467  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 18905773 - 18905834
Alignment:
Q  102 taaagaactaacatgaaattgaattgagtgtagcatagatgagaatgttgcgttgaatgtgt 163  Q
    |||||||| |||  |||||| |||| ||||||| ||||||||||||||| ||||||||||||    
T  18905773 taaagaaccaacccgaaattaaattaagtgtagtatagatgagaatgtttcgttgaatgtgt 18905834  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 33998370 - 33998299
Alignment:
Q  131 gtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||||| ||||||  ||||||||||| ||||||||| |||||  ||| |||||||||| ||||||| |||||    
T  33998370 gtagcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgactacatt 33998299  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 5129196 - 5129136
Alignment:
Q  138 agatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaa 198  Q
    ||||||| ||||||||||||||||||||| ||| |  ||| ||| |||||| |||||||||    
T  5129196 agatgaggatgttgcgttgaatgtgtggtaagattcgatgtgatcggattagaaatgacaa 5129136  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 38054696 - 38054632
Alignment:
Q  138 agatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||||||||||||||||||| ||||| |||||  | | |||||||||| |||||| ||||||    
T  38054696 agatgagaatgttgcgttgaatgggtggtaagactagacgggataggattagaaatgataacatt 38054632  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 49841519 - 49841598
Alignment:
Q  123 aattgagtgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||| ||||||||||||||||| |||||| |||| |||||| || |||||  | ||| || ||||| |||||||||||||    
T  49841519 aattaagtgtagcatagatgaggatgttgtgttggatgtgtagtaagactagacgaggtaagattagaaatgacaacatt 49841598  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 36820330 - 36820254
Alignment:
Q  126 tgagtgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    |||| |||||| |||| ||  |||||||||| ||||||||| |||||  | |||||||||||| ||||||| |||||    
T  36820330 tgagcgtagcaaagataaggttgttgcgttggatgtgtggtaagactagacgagataggattagaaatgacgacatt 36820254  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 9647972 - 9647900
Alignment:
Q  130 tgtagcatagatgagaatgttgcgttgaatgtgtggttagactgaatgagataggattataaatgacaacatt 202  Q
    ||||||| ||||||| ||||||||||| ||||||||| |||||  ||| |||| ||||| ||||| |||||||    
T  9647972 tgtagcagagatgaggatgttgcgttggatgtgtggtaagactagatgtgataagattagaaatgtcaacatt 9647900  T

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