View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9991_low_5 (Length: 465)
Name: NF9991_low_5
Description: NF9991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9991_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 208 - 341
Target Start/End: Complemental strand, 41968621 - 41968488
Alignment:
| Q |
208 |
acttcaactacagcttcagattcaactccagaaactcctgcaactcccacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968621 |
acttcaactacagcttcagattcaactccagaaactcctgcaactccgacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctc |
41968522 |
T |
|
| Q |
308 |
cagtgactcctgacccaacggtaaggcttataac |
341 |
Q |
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| T |
41968521 |
cagtgactcctgacccaacggtaaggcttataac |
41968488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 41968832 - 41968670
Alignment:
| Q |
3 |
tgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaagggttccattaattcttta---- |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968832 |
tgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaagggttccattaattctttatatc |
41968733 |
T |
|
| Q |
99 |
-----taatg---ttacatgaatgattttatttcaggctcatataattggagctaccattgag |
153 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968732 |
ctttttaatgttattacatgaatgattttatttcaggctcatataattggagctaccattgag |
41968670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 447
Target Start/End: Complemental strand, 41968395 - 41968364
Alignment:
| Q |
416 |
agtttcaggatggcaccactgaaggaagtctt |
447 |
Q |
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| T |
41968395 |
agtttcaggatggcaccactgaaggaagtctt |
41968364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 1235637 - 1235529
Alignment:
| Q |
230 |
caactccagaaactcctgcaactcccacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctccagtgactcctgacccaacggt |
329 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1235637 |
caactccagaaactccagcaactccgacaactccaccagctccggtgactccaacgcctcctgcaactccaccagctccagtgactcctgacccaacggt |
1235538 |
T |
|
| Q |
330 |
aaggcttat |
338 |
Q |
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||||||||| |
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| T |
1235537 |
aaggcttat |
1235529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 1235782 - 1235723
Alignment:
| Q |
94 |
ctttataatgttacatgaatgattttatttcaggctcatataattggagctaccattgag |
153 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1235782 |
ctttttaatgttacatgaatgattttatttcaggctcatataataggagctaccattgag |
1235723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 447
Target Start/End: Complemental strand, 1235429 - 1235398
Alignment:
| Q |
416 |
agtttcaggatggcaccactgaaggaagtctt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
1235429 |
agtttcaggatggcaccactgaaggaagtctt |
1235398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 1235673 - 1235630
Alignment:
| Q |
221 |
cttcagattcaactccagaaactcctgcaactcccacaactcca |
264 |
Q |
| |
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||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
1235673 |
cttcagattcaactccagaaactccggtaactccaacaactcca |
1235630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 29521984 - 29522024
Alignment:
| Q |
9 |
agtaatgaactgtaaataaagaagaggtgatgaccaaaatt |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29521984 |
agtaatgaactgtaaataaagaagaggtgatgaccaaaatt |
29522024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 35739628 - 35739589
Alignment:
| Q |
9 |
agtaatgaactgtaaataaagaagaggtgatgaccaaaat |
48 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||| |
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| T |
35739628 |
agtaatgaaccgtaaagaaagaagaggtgatgaccaaaat |
35739589 |
T |
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