View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9992_high_4 (Length: 240)
Name: NF9992_high_4
Description: NF9992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9992_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 16659967 - 16659745
Alignment:
| Q |
18 |
tctcaaaatatcttctcagttctcacaccttagcagccatgcacctcacagaagcatattgcaagaatacactgagacattataaggcaacccacaactc |
117 |
Q |
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| T |
16659967 |
tctcaaaatatcttctcagttctcacaccttagcagccatgcacctcacagaagcatattgcaagaatacactgagacattataaggcaacccacaactc |
16659868 |
T |
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| Q |
118 |
caacaacctgttatgtatatagctttggagctaactttggaaccaaattgcctaaaaagataaaataagatttggaatcatatttnnnnnnnnnnctagg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16659867 |
caacaacctgttatgtatatagctttggagctaactttggaaccaaattgcctaaaaagataaaataagatttggaatcatatttaaaaaaaaaactagg |
16659768 |
T |
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| Q |
218 |
gatagtctcaatttgctaaaatt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
16659767 |
gatagtctcaatttgctaaaatt |
16659745 |
T |
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