View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9993_high_12 (Length: 279)

Name: NF9993_high_12
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9993_high_12
NF9993_high_12
[»] chr5 (12 HSPs)
chr5 (21-261)||(41797992-41798230)
chr5 (190-249)||(39603853-39603912)
chr5 (188-249)||(325242-325303)
chr5 (188-249)||(30859229-30859290)
chr5 (179-249)||(22049193-22049263)
chr5 (188-249)||(22047730-22047791)
chr5 (190-239)||(27705383-27705432)
chr5 (207-242)||(32757842-32757877)
chr5 (188-233)||(15941409-15941454)
chr5 (188-249)||(22308856-22308917)
chr5 (188-241)||(34894147-34894200)
chr5 (216-249)||(39605526-39605559)
[»] chr7 (26 HSPs)
chr7 (188-249)||(32256452-32256513)
chr7 (188-249)||(47456432-47456493)
chr7 (182-249)||(47454329-47454396)
chr7 (188-242)||(40811338-40811392)
chr7 (188-249)||(32602931-32602992)
chr7 (179-249)||(43459444-43459514)
chr7 (188-249)||(6173507-6173568)
chr7 (191-249)||(43460880-43460938)
chr7 (188-249)||(30310119-30310180)
chr7 (188-249)||(30311526-30311587)
chr7 (188-249)||(33096867-33096928)
chr7 (188-249)||(33779141-33779202)
chr7 (189-249)||(40508377-40508437)
chr7 (188-249)||(4300105-4300166)
chr7 (208-249)||(22115221-22115262)
chr7 (188-249)||(40509791-40509852)
chr7 (213-249)||(30333308-30333344)
chr7 (189-249)||(45455429-45455489)
chr7 (214-249)||(11344531-11344566)
chr7 (183-242)||(35664345-35664404)
chr7 (203-242)||(38539684-38539723)
chr7 (207-249)||(32255006-32255048)
chr7 (188-249)||(4298711-4298772)
chr7 (188-249)||(30334694-30334755)
chr7 (213-249)||(3414891-3414927)
chr7 (183-247)||(41078749-41078813)
[»] chr2 (19 HSPs)
chr2 (188-249)||(43033080-43033141)
chr2 (178-249)||(6030527-6030598)
chr2 (179-249)||(7436456-7436526)
chr2 (183-249)||(28562866-28562932)
chr2 (188-249)||(7437818-7437879)
chr2 (188-249)||(11317425-11317486)
chr2 (188-249)||(17459251-17459312)
chr2 (188-249)||(32469146-32469207)
chr2 (183-249)||(32470632-32470698)
chr2 (188-249)||(11315931-11315992)
chr2 (191-249)||(42641917-42641975)
chr2 (188-241)||(6028743-6028796)
chr2 (188-249)||(11547657-11547718)
chr2 (191-239)||(36010578-36010626)
chr2 (191-235)||(43034542-43034586)
chr2 (207-242)||(2277533-2277568)
chr2 (190-249)||(28561368-28561427)
chr2 (188-249)||(17460741-17460802)
chr2 (189-249)||(36011699-36011758)
[»] chr1 (15 HSPs)
chr1 (188-249)||(52627513-52627574)
chr1 (188-249)||(14470854-14470915)
chr1 (188-249)||(45585066-45585127)
chr1 (181-249)||(46111545-46111613)
chr1 (188-249)||(15071340-15071401)
chr1 (188-249)||(27814290-27814351)
chr1 (188-249)||(34352013-34352074)
chr1 (188-249)||(50444755-50444816)
chr1 (188-249)||(52628930-52628991)
chr1 (188-249)||(16123285-16123346)
chr1 (188-249)||(14477848-14477909)
chr1 (216-249)||(15072847-15072880)
chr1 (188-249)||(24499712-24499773)
chr1 (188-249)||(33369252-33369313)
chr1 (202-242)||(46467158-46467198)
[»] scaffold0031 (2 HSPs)
scaffold0031 (183-249)||(123962-124028)
scaffold0031 (189-249)||(125290-125350)
[»] chr8 (28 HSPs)
chr8 (183-249)||(32798589-32798655)
chr8 (188-249)||(32695332-32695393)
chr8 (188-249)||(32797136-32797197)
chr8 (186-249)||(45281245-45281308)
chr8 (188-249)||(44076420-44076481)
chr8 (178-250)||(212768-212840)
chr8 (178-250)||(239414-239486)
chr8 (178-250)||(726391-726463)
chr8 (178-250)||(792769-792841)
chr8 (178-250)||(798892-798964)
chr8 (188-249)||(28418804-28418865)
chr8 (188-249)||(28420231-28420292)
chr8 (188-249)||(30787657-30787718)
chr8 (189-249)||(211594-211654)
chr8 (189-249)||(240602-240662)
chr8 (189-249)||(725217-725277)
chr8 (189-249)||(793957-794017)
chr8 (188-236)||(12850465-12850513)
chr8 (207-249)||(22551024-22551066)
chr8 (183-249)||(26696525-26696591)
chr8 (188-249)||(4810467-4810528)
chr8 (188-249)||(42870811-42870872)
chr8 (188-235)||(42872260-42872307)
chr8 (183-249)||(6397776-6397842)
chr8 (179-249)||(13197998-13198068)
chr8 (191-249)||(41629709-41629767)
chr8 (188-249)||(8570116-8570177)
chr8 (188-249)||(30786674-30786735)
[»] chr4 (31 HSPs)
chr4 (191-249)||(27850989-27851047)
chr4 (188-249)||(1190249-1190310)
chr4 (188-249)||(4128991-4129052)
chr4 (188-249)||(6348153-6348214)
chr4 (188-249)||(24426337-24426398)
chr4 (188-249)||(44501516-44501577)
chr4 (189-249)||(1829752-1829812)
chr4 (183-249)||(393695-393761)
chr4 (188-249)||(390215-390276)
chr4 (188-249)||(1188841-1188902)
chr4 (188-249)||(1831320-1831381)
chr4 (192-249)||(6349610-6349667)
chr4 (188-249)||(1588146-1588207)
chr4 (188-249)||(1794409-1794470)
chr4 (188-249)||(2312539-2312600)
chr4 (185-238)||(4871432-4871485)
chr4 (188-249)||(37882832-37882893)
chr4 (190-249)||(27847678-27847737)
chr4 (190-249)||(42810260-42810319)
chr4 (183-249)||(37884334-37884400)
chr4 (188-249)||(2310921-2310982)
chr4 (188-249)||(11968509-11968570)
chr4 (188-249)||(44503735-44503796)
chr4 (188-249)||(52239875-52239936)
chr4 (181-250)||(53205539-53205608)
chr4 (203-242)||(53432075-53432114)
chr4 (203-242)||(53435817-53435856)
chr4 (191-249)||(52963570-52963628)
chr4 (188-249)||(1587180-1587241)
chr4 (188-233)||(15450148-15450193)
chr4 (213-249)||(54485602-54485638)
[»] scaffold0077 (1 HSPs)
scaffold0077 (188-249)||(54242-54303)
[»] chr6 (11 HSPs)
chr6 (188-249)||(6452568-6452629)
chr6 (188-249)||(232174-232235)
chr6 (178-239)||(27080912-27080973)
chr6 (188-249)||(34023884-34023945)
chr6 (188-249)||(34024121-34024181)
chr6 (189-249)||(7310275-7310335)
chr6 (188-249)||(15730087-15730148)
chr6 (190-249)||(27967106-27967165)
chr6 (188-249)||(233621-233682)
chr6 (188-249)||(6452282-6452343)
chr6 (188-249)||(7311781-7311842)
[»] chr3 (26 HSPs)
chr3 (188-249)||(40244185-40244246)
chr3 (183-249)||(37735299-37735365)
chr3 (188-249)||(53624418-53624479)
chr3 (189-249)||(34819341-34819401)
chr3 (188-249)||(18197145-18197206)
chr3 (188-249)||(38240904-38240965)
chr3 (188-249)||(38242573-38242634)
chr3 (188-249)||(50810891-50810952)
chr3 (188-249)||(50864912-50864973)
chr3 (188-236)||(8795938-8795986)
chr3 (193-249)||(18442255-18442311)
chr3 (193-249)||(19487329-19487385)
chr3 (188-242)||(12108047-12108101)
chr3 (191-249)||(18458714-18458772)
chr3 (191-249)||(23443514-23443572)
chr3 (188-249)||(3209988-3210049)
chr3 (188-249)||(50809419-50809480)
chr3 (188-249)||(50866382-50866443)
chr3 (188-249)||(53194927-53194988)
chr3 (191-249)||(41544663-41544721)
chr3 (188-249)||(12105288-12105349)
chr3 (216-249)||(34818112-34818145)
chr3 (188-249)||(36176564-36176625)
chr3 (188-249)||(37736138-37736199)
chr3 (188-249)||(40364317-40364378)
chr3 (188-236)||(53187557-53187605)
[»] scaffold0078 (1 HSPs)
scaffold0078 (191-242)||(18813-18864)
[»] scaffold0034 (1 HSPs)
scaffold0034 (188-249)||(109802-109863)
[»] scaffold0118 (1 HSPs)
scaffold0118 (201-249)||(43632-43680)
[»] scaffold1251 (1 HSPs)
scaffold1251 (207-242)||(1149-1184)
[»] scaffold1152 (1 HSPs)
scaffold1152 (188-249)||(2533-2593)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 41798230 - 41797992
Alignment:
Q  21 acctgcttagtaaatacacacatatatgaacttatccaa---gacaaacacatatatcatattattcgtgtcatgaatatcgatttacatttgaagatag 117  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |    
T  41798230 acctgcttagtaaatacacacatatatgaacttatccaacaagacaaacatatatatcatattattcgtgtcatgaatatccatttacatttgtagatgg 41798131  T
Q  118 aaatatcatcggatgggatgtccatcaatacnnnnnnnncttctaaaaatacagt-atcccttttattttgggcttatttgatccattgatccctcaaat 216  Q
    |||||||| |||||||||||| || | ||||         || |  ||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||    
T  41798130 aaatatcaccggatgggatgttcaccgatacttt------ttttttaaatacagtaaccccttttattttgagcttatttgatccattggtccctcaaat 41798037  T
Q  217 aatttcaagttttcattttggtcccagaattaaatatgatatgac 261  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  41798036 aatttcaagtttttattttggtcccacaattaaatatgatatgac 41797992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 39603853 - 39603912
Alignment:
Q  190 cttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  39603853 cttatttgatccattgatccctcaaataatttcaagttttcattttgatcccacaattaa 39603912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 325303 - 325242
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||    
T  325303 ggcttatttgatctaatggtccctcaaataatttcaagttttcattttggtcccacaattaa 325242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 30859290 - 30859229
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  30859290 ggcttatttgattcattagtccctcaaataatttcaagttttcattttggtcccacaattaa 30859229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 22049263 - 22049193
Alignment:
Q  179 tttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||| ||||||||||| |||||  ||||  |||||||||||||||||||||||||||||| ||||||    
T  22049263 tttatttttggcttatttgaaccattagtcccctaaataatttcaagttttcattttggtcccataattaa 22049193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 22047730 - 22047791
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||| || ||||||||||||||||||||||||||| ||||||    
T  22047730 ggcttatttgatccaatggtcccttaattaatttcaagttttcattttggtcccacaattaa 22047791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 27705432 - 27705383
Alignment:
Q  190 cttatttgatccattgatccctcaaataatttcaagttttcattttggtc 239  Q
    |||||||||| || || | |||||||||||||||||||||||||||||||    
T  27705432 cttatttgattcaatggttcctcaaataatttcaagttttcattttggtc 27705383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 32757842 - 32757877
Alignment:
Q  207 tccctcaaataatttcaagttttcattttggtccca 242  Q
    |||||||||||||||| |||||||||||||||||||    
T  32757842 tccctcaaataatttccagttttcattttggtccca 32757877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 15941454 - 15941409
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcatt 233  Q
    |||||||| ||||  ||| |||||||||||||||||||||||||||    
T  15941454 ggcttattagatcgtttggtccctcaaataatttcaagttttcatt 15941409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 22308917 - 22308856
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||| ||||  ||| ||||  ||||||||||| |||||||||||||||||| ||||||    
T  22308917 ggcttattagatcgtttggtcccctaaataatttcatgttttcattttggtcccataattaa 22308856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 34894147 - 34894200
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtccc 241  Q
    |||||||| ||||||||| ||||| || ||||||| | ||||||||||||||||    
T  34894147 ggcttattagatccattggtcccttaattaatttccatttttcattttggtccc 34894200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 39605559 - 39605526
Alignment:
Q  216 taatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  39605559 taatttcaagttttcattttggtcccacaattaa 39605526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 32256513 - 32256452
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  32256513 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccataattaa 32256452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 47456493 - 47456432
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  47456493 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaa 47456432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 47454329 - 47454396
Alignment:
Q  182 attttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||    
T  47454329 atttttggcttatttgatccagtggtccctcaaataatttcaagctttcattttggtcccacaattaa 47454396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 40811338 - 40811392
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtccca 242  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  40811338 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtccca 40811392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 32602931 - 32602992
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||    
T  32602931 ggcttatttgatccattggtccttcaaataatttcaagtttttattttggtcccataattaa 32602992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 43459444 - 43459514
Alignment:
Q  179 tttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||  |||||||||||||||||  ||||  |||||||||||||||||||||||||||||| ||||||    
T  43459444 tttatttatggcttatttgatccattagtcccctaaataatttcaagttttcattttggtcccacaattaa 43459514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 6173568 - 6173507
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||  |||| ||||||    
T  6173568 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttgtacccataattaa 6173507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 43460938 - 43460880
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| || ||||||||||||| |||| |||||||||||||||||||| ||||||    
T  43460938 ttatttgattcaatgatccctcaaattatttgaagttttcattttggtcccacaattaa 43460880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 30310119 - 30310180
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||| |||||| ||||||    
T  30310119 ggcttatttgatccaatagtcccttaaataatttcaagttttcatttttgtcccacaattaa 30310180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 30311587 - 30311526
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||  ||||  |||||||||||| ||||||||||||||||| ||||||    
T  30311587 ggcttatttgatccattagtcccctaaataatttcaaattttcattttggtcccacaattaa 30311526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 33096867 - 33096928
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||| | |||| ||||||    
T  33096867 ggcttatttgatccaatggtccctcaaataatttcaagttctcattttaggcccacaattaa 33096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 33779202 - 33779141
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||  ||||  ||||||||||||||||||||||||| |||| ||||||    
T  33779202 ggcttatttgatccattagtcccctaaataatttcaagttttcattttggccccacaattaa 33779141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 40508377 - 40508437
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| |||||| ||||||    
T  40508377 gcttatttgatccaatggtcccctaaataatttcaagttttcatttttgtcccacaattaa 40508437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 4300166 - 4300105
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| |  ||||   ||||||||||||||||||||||||||||| ||||||    
T  4300166 ggcttatttgatccaatcgtcccctgaataatttcaagttttcattttggtcccacaattaa 4300105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 22115262 - 22115221
Alignment:
Q  208 ccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  22115262 ccctaaaataatttcaagttttcattttggtcccacaattaa 22115221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 40509852 - 40509791
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||| | || || ||||  |||||||||||||||||||||||||||||| ||||||    
T  40509852 ggcttatttgtttcaatggtcccctaaataatttcaagttttcattttggtcccacaattaa 40509791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 30333308 - 30333344
Alignment:
Q  213 aaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30333308 aaataatttcaagttttcattttggtcccacaattaa 30333344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 45455489 - 45455429
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||  || ||||| || ||||||||| ||||||||||||||||| ||||||    
T  45455489 gcttatttgatccgatggtcccttaattaatttcaaattttcattttggtcccacaattaa 45455429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 11344531 - 11344566
Alignment:
Q  214 aataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||||||||||||||| ||||||    
T  11344531 aataatttcaagttttcattttggtcccacaattaa 11344566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 35664404 - 35664345
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtccca 242  Q
    |||| |||||||| ||||||||||||||| || ||||||| | ||||||||||| |||||    
T  35664404 ttttaggcttattagatccattgatcccttaattaatttccatttttcattttgatccca 35664345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 38539684 - 38539723
Alignment:
Q  203 ttgatccctcaaataatttcaagttttcattttggtccca 242  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  38539684 ttgatcccttaattaatttcaagttttcattttggtccca 38539723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 32255006 - 32255048
Alignment:
Q  207 tccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||| |||| |||||||||||| ||||||    
T  32255006 tccctcaaataatttcaaatttttattttggtcccataattaa 32255048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 4298711 - 4298772
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||  ||||||||| ||||||| |||||| ||||| ||||||    
T  4298711 ggcttatttgatccaatggtcccctaaataattttaagtttttattttgatcccacaattaa 4298772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 30334755 - 30334694
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | ||||||||| ||||  || |||||||||||||||||||| |||||| ||||||    
T  30334755 ggcttaatagatccattggtcccctaactaatttcaagttttcattttagtcccacaattaa 30334694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 3414927 - 3414891
Alignment:
Q  213 aaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  3414927 aaataatttcatgttttcattttggtcccataattaa 3414891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 41078749 - 41078813
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaatt 247  Q
    |||| |||||||| |||||  || |||||||| ||||||| | ||||||||||||||||| ||||    
T  41078749 ttttaggcttattagatccgctggtccctcaattaatttccatttttcattttggtcccacaatt 41078813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 43033080 - 43033141
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  43033080 ggcttatttgatccaatgatcccttaaataatttcaagttttcattttggtcccacaattaa 43033141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 6030598 - 6030527
Alignment:
Q  178 ttttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| ||||||||||||||| |  ||||||||||||||| |||||||||||||| ||||| ||||||    
T  6030598 ttttattttaggcttatttgatccaatagtccctcaaataatttgaagttttcattttgatcccacaattaa 6030527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 7436456 - 7436526
Alignment:
Q  179 tttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||| ||| ||||||||||| || ||||||||||||||||||||||| |||||||||| | ||||||    
T  7436456 tttatttttggcgtatttgatccaatggtccctcaaataatttcaagtttttattttggtcctacaattaa 7436526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 28562932 - 28562866
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||| || || |||||||||||||||||| ||||||||||||||||| ||||||    
T  28562932 ttttaggcttatttgattcaatggtccctcaaataatttcaaattttcattttggtcccataattaa 28562866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 7437879 - 7437818
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |  ||||||||||||||||||||||||||||||||| ||||||    
T  7437879 ggcttatttgatccaatggttgctcaaataatttcaagttttcattttggtcccacaattaa 7437818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 11317486 - 11317425
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || || |||||||||||||||||| ||||||||||||||||| ||||||    
T  11317486 ggcttatttgattcaatggtccctcaaataatttcaaattttcattttggtcccacaattaa 11317425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 17459251 - 17459312
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||||||| || ||||||    
T  17459251 ggcttatttgatccattagtcccttaaataatttcaagttttcattttggtcacacaattaa 17459312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 32469146 - 32469207
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| ||||| ||||||    
T  32469146 ggcttatttgattcaatggtccctcaaataatttcaagttttcattttgatcccacaattaa 32469207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 32470698 - 32470632
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||||||||  ||||  ||||||||||||||||| |||||||||||| ||||||    
T  32470698 tttttggcttatttgatccattagtcccctaaataatttcaagtttttattttggtcccacaattaa 32470632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 11315931 - 11315992
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| || ||||| ||||  |||||||||||||||||||||||||||||| ||||||    
T  11315931 ggcttatttaattcattggtcccctaaataatttcaagttttcattttggtcccacaattaa 11315992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 42641975 - 42641917
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| || || |||||||||||||||||| |||| |||||||||||| ||||||    
T  42641975 ttatttgattcaatggtccctcaaataatttcaaatttttattttggtcccataattaa 42641917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 6028743 - 6028796
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtccc 241  Q
    |||||||||||||||||| || |  |||||||||||| ||||||||||||||||    
T  6028743 ggcttatttgatccattggtctcctaaataatttcaaattttcattttggtccc 6028796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 11547657 - 11547718
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||  |||| ||| | ||||||||||||||||||||||||||| || ||||||    
T  11547657 ggcttatttgatttattggtcctttaaataatttcaagttttcattttggtctcataattaa 11547718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 36010578 - 36010626
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtc 239  Q
    ||||||||||||||  ||||| ||||||||||| |||||||||||||||    
T  36010578 ttatttgatccattagtcccttaaataatttcatgttttcattttggtc 36010626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 43034586 - 43034542
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcatttt 235  Q
    ||||||||| || || |||||||||||||||||||||||||||||    
T  43034586 ttatttgattcaatggtccctcaaataatttcaagttttcatttt 43034542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 2277568 - 2277533
Alignment:
Q  207 tccctcaaataatttcaagttttcattttggtccca 242  Q
    |||||||||||||||| |||||||||||||||||||    
T  2277568 tccctcaaataatttccagttttcattttggtccca 2277533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 28561368 - 28561427
Alignment:
Q  190 cttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||| || || ||||| ||||||||| ||||||||||||||||| || ||||||    
T  28561368 cttatttgattcaatggtcccttaaataattttaagttttcattttggtctcacaattaa 28561427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 17460802 - 17460741
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||   || ||||||||||||||||||||| ||||| ||||||    
T  17460802 ggcttatttgatccaatggtcctctaattaatttcaagttttcattttgatcccacaattaa 17460741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 36011758 - 36011699
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||||||| | ||||||||| ||| |||||||||  ||||| ||||||    
T  36011758 gcttatttgatccattgatcctttaaataattttaag-tttcattttaatcccataattaa 36011699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 52627513 - 52627574
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  52627513 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaa 52627574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 14470854 - 14470915
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||  |||||||||||||||||||||||||||||| ||||||    
T  14470854 ggcttatttgatccaatggtcccctaaataatttcaagttttcattttggtcccacaattaa 14470915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 45585127 - 45585066
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||||||| || ||||||    
T  45585127 ggcttatttgatccaatagtccctcaaataatttcaagttttcattttggtctcacaattaa 45585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 46111613 - 46111545
Alignment:
Q  181 tattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| |||||||||||| || || ||||| ||||||||||||||||| |||||||||||| ||||||    
T  46111613 tattttaggcttatttgattcaatggtcccttaaataatttcaagtttttattttggtcccacaattaa 46111545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 15071340 - 15071401
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| |||||||| ||||  ||||||||||||||||||||||||||| || ||||||    
T  15071340 ggcttatttaatccattggtcccctaaataatttcaagttttcattttggtcacataattaa 15071401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 27814290 - 27814351
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||| |||| | |||||||||||||||||||||||||||||| |||| | ||||||    
T  27814290 ggcttatttgttccaatcatccctcaaataatttcaagttttcattttagtcctataattaa 27814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 34352074 - 34352013
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| |  ||||| ||||||||| |||||||||||||||||||| ||||||    
T  34352074 ggcttatttgatccaatagtcccttaaataattttaagttttcattttggtcccacaattaa 34352013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 50444816 - 50444755
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || || |||||||||||||||||| |||||||||| |||||| ||||||    
T  50444816 ggcttatttgattcaatggtccctcaaataatttcaaattttcattttagtcccacaattaa 50444755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 52628991 - 52628930
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| || | ||||| ||||||||||||||||| |||||||||||| ||||||    
T  52628991 ggcttatttgatctatcggtcccttaaataatttcaagttttaattttggtcccacaattaa 52628930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 16123285 - 16123346
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| |||||||||   ||||||||| |||||||||||||||| ||| ||||||    
T  16123285 ggcttatttgattcattgatcctctaaataatttaaagttttcattttggttccacaattaa 16123346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 14477909 - 14477848
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||  ||||||||| ||||||||| |||| ||||| ||||||    
T  14477909 ggcttatttgatccaatggtcccataaataattttaagttttcactttgatcccacaattaa 14477848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 15072880 - 15072847
Alignment:
Q  216 taatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  15072880 taatttcaagttttcattttggtcccacaattaa 15072847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 24499773 - 24499712
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||   ||| ||||  ||||||||||||||||||||||||||| || ||||||    
T  24499773 ggcttatttgatttgttggtcccctaaataatttcaagttttcattttggtctcacaattaa 24499712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 33369313 - 33369252
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || || |  || ||||||||||| ||||||||||||||| ||||||    
T  33369313 ggcttatttgatccaatggtctcctaattaatttcaagtattcattttggtcccataattaa 33369252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 46467158 - 46467198
Alignment:
Q  202 attgatccctcaaataatttcaagttttcattttggtccca 242  Q
    |||||||| | || |||||||||||||||||||||||||||    
T  46467158 attgatcctttaattaatttcaagttttcattttggtccca 46467198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 123962 - 124028
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| ||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||    
T  123962 tttttggcttatttgatccaatggtccttcaaataatttcaagttttcattttggtcccacaattaa 124028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 125350 - 125290
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||    
T  125350 gcttatttgatccaatggtccctcaaataatttcaaattttcattttggtcccacaattaa 125290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 32798655 - 32798589
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||    
T  32798655 ttttaggcttatttgatgcaatggtccctcaaataatttcaagttttcattttggtcccacaattaa 32798589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 32695393 - 32695332
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||    
T  32695393 ggcttatttgattcattggtccctcaaataatttcaagttttcattttggtctcacaattaa 32695332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 32797136 - 32797197
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  32797136 ggcttatttgatctattggtcccttaaataatttcaagttttcattttggtcccacaattaa 32797197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 45281308 - 45281245
Alignment:
Q  186 tgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||||||||||| | ||||||    
T  45281308 tgggcttatttgatccaatagtccctcaaataatttcaagttttcattttggtccaacaattaa 45281245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 44076481 - 44076420
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||||||||||||||||| |||| |||||||||||| ||||||    
T  44076481 ggcttatttgatccaatggtccctcaaataatttcaaatttttattttggtcccacaattaa 44076420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 212840 - 212768
Alignment:
Q  178 ttttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaaa 250  Q
    ||||||||| |||||||||||||||||  |||| ||||||||||||  |||||||||| |||||| |||||||    
T  212840 ttttatttttggcttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaa 212768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 239414 - 239486
Alignment:
Q  178 ttttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaaa 250  Q
    ||||||||| |||||||||||||||||  |||| ||||||||||||  |||||||||| |||||| |||||||    
T  239414 ttttatttttggcttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaa 239486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 726463 - 726391
Alignment:
Q  178 ttttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaaa 250  Q
    ||||||||| |||||||||||||||||  |||| ||||||||||||  |||||||||| |||||| |||||||    
T  726463 ttttatttttggcttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaa 726391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 792769 - 792841
Alignment:
Q  178 ttttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaaa 250  Q
    ||||||||| |||||||||||||||||  |||| ||||||||||||  |||||||||| |||||| |||||||    
T  792769 ttttatttttggcttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaa 792841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 798964 - 798892
Alignment:
Q  178 ttttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaaa 250  Q
    ||||||||| |||||||||||||||||  |||| ||||||||||||  |||||||||| |||||| |||||||    
T  798964 ttttatttttggcttatttgatccattagtcccccaaataatttcagattttcattttcgtcccacaattaaa 798892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 28418804 - 28418865
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||    
T  28418804 ggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaa 28418865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 28420292 - 28420231
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||    
T  28420292 ggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaa 28420231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 30787718 - 30787657
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| | || || |||||||||||| |||||||||||||||||||| ||||||    
T  30787718 ggcttatttgatctaatgttctctcaaataattttaagttttcattttggtcccataattaa 30787657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 211594 - 211654
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||| ||||  ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  211594 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaa 211654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 240662 - 240602
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||| ||||  ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  240662 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaa 240602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 725217 - 725277
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||| ||||  ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  725217 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaa 725277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 794017 - 793957
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||| ||||  ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  794017 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaa 793957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 12850513 - 12850465
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttg 236  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||    
T  12850513 ggcttatttgatccaatggtccctcaaataatttcaaattttcattttg 12850465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 22551024 - 22551066
Alignment:
Q  207 tccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  22551024 tccctcaaataatttcaagtttttattttggtcccacaattaa 22551066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 26696525 - 26696591
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||| || || ||||  || ||||||||||||||||||||||||||| ||||||    
T  26696525 ttttaggcttatttgattcaatggtcccctaattaatttcaagttttcattttggtcccacaattaa 26696591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 4810467 - 4810528
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| | || ||||||||||| |||||| |||| |||||||||||| ||||||    
T  4810467 ggcttatttgatctaatggtccctcaaatactttcaaatttttattttggtcccataattaa 4810528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 42870811 - 42870872
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |  |  |||||||||||||||||||||||||||||| ||||||    
T  42870811 ggcttatttgatccaatggtttcctaaataatttcaagttttcattttggtcccacaattaa 42870872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 42872307 - 42872260
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcatttt 235  Q
    ||||||||||||||| || ||||| ||||||||| |||||||||||||    
T  42872307 ggcttatttgatccaatggtcccttaaataattttaagttttcatttt 42872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 6397776 - 6397842
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| ||||||||||||||||| |||    |||||||||||  ||||||||||||||||| ||||||    
T  6397776 ttttaggcttatttgatccattaatcttctaaataatttcatattttcattttggtcccacaattaa 6397842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 13198068 - 13197998
Alignment:
Q  179 tttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | |||||||||| |||| || ||| | |||||||||| ||||||| ||||||||||| ||||||    
T  13198068 tttattattggcttatttgctccaatggtccattaaataatttcgagttttcgttttggtcccacaattaa 13197998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 41629709 - 41629767
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||  ||||  ||||||||||||||||| ||||||||| || ||||||    
T  41629709 ttatttgatccattagtcccctaaataatttcaagtttttattttggtctcacaattaa 41629767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 8570116 - 8570177
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||  || |||||||| |||||||||||||||| | ||||||    
T  8570116 ggcttatttgatccaatggtcccctaattaatttcacgttttcattttggtcctacaattaa 8570177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 30786674 - 30786735
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || || ||| ||||||||||| |||||||||||||| || || ||||||    
T  30786674 ggcttatttgattcaatggtccttcaaataattttaagttttcattttgatcacataattaa 30786735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 27851047 - 27850989
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  27851047 ttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaa 27850989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 1190310 - 1190249
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  1190310 ggcttatttgaaccattggtccctcaaataattttaagttttcattttggtcccataattaa 1190249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 4128991 - 4129052
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||    
T  4128991 ggcttatttgatccaatggttcctcaaataatttcaagttttcattttggtcccacaattaa 4129052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 6348153 - 6348214
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||    
T  6348153 ggcttatttgatcaaatggtccctcaaataatttcaagttttcattttggtcccacaattaa 6348214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 24426337 - 24426398
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||    
T  24426337 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtctcacaattaa 24426398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 44501516 - 44501577
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  44501516 ggcttatttgaaccattggtccctcaaataatttcaagttttcattctggtcccataattaa 44501577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 1829752 - 1829812
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||||||| ||||||    
T  1829752 gcttatttgatccaacggtccctcaaataatttcaagttttcattttggtcccacaattaa 1829812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 393761 - 393695
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||||||  | |||||||||||||||||| ||||||||||||||||| ||||||    
T  393761 tttttggcttatttgatccaacggtccctcaaataatttcaaattttcattttggtcccacaattaa 393695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 390215 - 390276
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| ||||| ||||  |||||||||||||||||||||||||||||| ||||||    
T  390215 ggcttatttgattcattggtcccctaaataatttcaagttttcattttggtcccacaattaa 390276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 1188841 - 1188902
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| |  ||||||||||||||||||||||| |||||||||||| ||||||    
T  1188841 ggcttatttgatccaatagtccctcaaataatttcaagtttttattttggtcccacaattaa 1188902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 1831381 - 1831320
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||| |||||| ||||||    
T  1831381 ggcttatttgatccaatggtccctcaattaatttcaagttttcattttagtcccacaattaa 1831320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 6349667 - 6349610
Alignment:
Q  192 tatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||| || || |||||||||||||||||||||||||||||||||||| ||||||    
T  6349667 tatttgattcaatggtccctcaaataatttcaagttttcattttggtcccacaattaa 6349610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 1588207 - 1588146
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||  ||| ||||||||||||||| ||||||||||||| |||||| ||||||    
T  1588207 ggcttatttgatcttttggtccctcaaataattttaagttttcattttagtcccacaattaa 1588146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 1794409 - 1794470
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| || || ||||||    
T  1794409 ggcttatttgattcaatggtccctcaaataatttcaagttttcattttgatctcacaattaa 1794470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 2312600 - 2312539
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||| ||||| | |||||||||||||| |||||| |||||| ||||||    
T  2312600 ggcttatttgatccattggtcccttagataatttcaagtttccattttagtcccacaattaa 2312539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 4871485 - 4871432
Alignment:
Q  185 ttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggt 238  Q
    ||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||    
T  4871485 ttgggcttatttgatccattggtccccaaaataatttcatgttttcattttggt 4871432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 37882832 - 37882893
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||  | || ||||||||||||||||||||||||||||| |||||| ||||||    
T  37882832 ggcttatttgatttaatggtccctcaaataatttcaagttttcattttagtcccacaattaa 37882893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 27847678 - 27847737
Alignment:
Q  190 cttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||| | | || ||||||||||||||||||||| |||||||||||| ||||||    
T  27847678 cttatttgatctaataattcctcaaataatttcaagtttttattttggtcccacaattaa 27847737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 42810319 - 42810260
Alignment:
Q  190 cttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| |  ||||| |||||||||||| ||||||||||||||||| ||||||    
T  42810319 cttatttgatccaatagtcccttaaataatttcaacttttcattttggtcccacaattaa 42810260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 37884400 - 37884334
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||| || || ||||||||||||||| || |||||||||| |||||| ||||||    
T  37884400 tttttggcttatttgattcaatggtccctcaaataattttaaattttcatttttgtcccataattaa 37884334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 2310921 - 2310982
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||   || ||||||||||||||||||||||||||| ||||||    
T  2310921 ggcttatttgatccaatggtcctctaattaatttcaagttttcattttggtcccacaattaa 2310982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 11968509 - 11968570
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||   || | ||||||||||||||||||||||||||||||| || ||||||    
T  11968509 ggcttatttgatcttatggttcctcaaataatttcaagttttcattttggtctcacaattaa 11968570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 44503796 - 44503735
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || |  ||||||||||||||||||||||| ||||||||| || ||||||    
T  44503796 ggcttatttgattcaatagtccctcaaataatttcaagtttttattttggtctcacaattaa 44503735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 52239875 - 52239936
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| | || |||||||||||||||||| |||| |||||| ||||| ||||||    
T  52239875 ggcttatttgatctaatggtccctcaaataatttcaaatttttattttgatcccacaattaa 52239936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 53205608 - 53205539
Alignment:
Q  181 tattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaaa 250  Q
    |||||| |||||||||||| ||||  |||| ||||||||||||  |||||||||| |||||| |||||||    
T  53205608 tatttttggcttatttgattcattagtcccccaaataatttcagattttcattttcgtcccacaattaaa 53205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 53432075 - 53432114
Alignment:
Q  203 ttgatccctcaaataatttcaagttttcattttggtccca 242  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  53432075 ttgatcccttaattaatttcaagttttcattttggtccca 53432114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 53435856 - 53435817
Alignment:
Q  203 ttgatccctcaaataatttcaagttttcattttggtccca 242  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  53435856 ttgatcccttaattaatttcaagttttcattttggtccca 53435817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 52963570 - 52963628
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||| |||| |||   ||||||||||||||||||||||||||| || ||||||    
T  52963570 ttatttgatcaattggtcctctaaataatttcaagttttcattttggtctcacaattaa 52963628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 1587180 - 1587241
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||  | ||||||||||||||| || |||||||||| ||| || ||||||    
T  1587180 ggcttatttgatccaacggtccctcaaataattttaaattttcattttagtctcacaattaa 1587241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 15450193 - 15450148
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcatt 233  Q
    |||||||||||| ||||| ||||| ||||||||||| |||||||||    
T  15450193 ggcttatttgattcattggtcccttaaataatttcaggttttcatt 15450148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 54485638 - 54485602
Alignment:
Q  213 aaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  54485638 aaataatttcaagttttcattttgatcccataattaa 54485602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 54303 - 54242
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||    
T  54303 ggcttatttgatccattggtccctcaaataatttcaagttttaattttggtcgcacaattaa 54242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 6452629 - 6452568
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||    
T  6452629 ggcttatttgatccattggtcccctaaataatttcaagttttcattttggtcccataattaa 6452568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 232174 - 232235
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||    
T  232174 ggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaa 232235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 27080912 - 27080973
Alignment:
Q  178 ttttattttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtc 239  Q
    ||||||||  || |||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  27080912 ttttatttaaggattatttgatccaatgatcccttaaataatttcgagttttcattttggtc 27080973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 34023884 - 34023945
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| | || ||||||||||||||| |||||||||||||||| ||| ||||||    
T  34023884 ggcttatttgatcaaatggtccctcaaataattttaagttttcattttggtaccacaattaa 34023945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 34024181 - 34024121
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| |||| | |||||||||||||| ||||||||||||||||| ||||||    
T  34024181 ggcttatttgatccaatgattc-tcaaataatttcaaattttcattttggtcccacaattaa 34024121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 7310275 - 7310335
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| | ||| | ||||||||| |||||||||||||||||||| ||||||    
T  7310275 gcttatttgatccatcggtcctttaaataattttaagttttcattttggtcccataattaa 7310335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 15730148 - 15730087
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||| ||| ||||| |||||||| ||||||| | ||||||||||||||||| ||||||    
T  15730148 ggcttattagattcattggtccctcaattaatttccatttttcattttggtcccacaattaa 15730087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 27967165 - 27967106
Alignment:
Q  190 cttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| || |||| ||||||||| | ||||||||||||| ||||| ||||||    
T  27967165 cttatttgatccaatggtcccccaaataattcctagttttcattttgatcccacaattaa 27967106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 233682 - 233621
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | |||| |||| ||| | |||||||||||| ||||||||||||||||| ||||||    
T  233682 ggcttaatagatcaattggtcctttaaataatttcaatttttcattttggtcccataattaa 233621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 6452282 - 6452343
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| |||||| | ||||  |||||||||||||||||| ||||||||| | ||||||    
T  6452282 ggcttatttaatccatcggtcccctaaataatttcaagttttcgttttggtcctataattaa 6452343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 7311842 - 7311781
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| || || || ||||| ||||||||| |||||||||||||| ||||| ||||||    
T  7311842 ggcttatttaattcaatggtcccttaaataattttaagttttcattttgatcccacaattaa 7311781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 40244185 - 40244246
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||    
T  40244185 ggcttatttgatccattggtcccttaaataatttcaagttttcattttggtctcacaattaa 40244246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 37735299 - 37735365
Alignment:
Q  183 ttttgggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||| |||||||||||||||||| ||| | ||||||||| |||||||||||||||||||| ||||||    
T  37735299 ttttaggcttatttgatccattggtcctttaaataattttaagttttcattttggtcccataattaa 37735365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 53624479 - 53624418
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| || || ||||||    
T  53624479 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttgatctcacaattaa 53624418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 34819401 - 34819341
Alignment:
Q  189 gcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| ||| | ||||||    
T  34819401 gcttatttgatccattagtccctcaaataatttcaagttttcattttgatcctacaattaa 34819341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 18197145 - 18197206
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||    |||||||||||||||||| ||||||||||||||||| ||||||    
T  18197145 ggcttatttgatccaaatgtccctcaaataatttcaaattttcattttggtcccacaattaa 18197206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 38240904 - 38240965
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||||||||| |||||  ||||||||||| |||| |||||||||||| ||||||    
T  38240904 ggcttatttgatccattggtcccttgaataatttcaaatttttattttggtcccacaattaa 38240965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 38242634 - 38242573
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| ||  | |||||||||||||||||||||||||||||| ||||| ||||||    
T  38242634 ggcttatttgattcaaaggtccctcaaataatttcaagttttcattttgatcccacaattaa 38242573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 50810952 - 50810891
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||    
T  50810952 ggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaa 50810891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 50864912 - 50864973
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||    
T  50864912 ggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaa 50864973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 8795938 - 8795986
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttg 236  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  8795938 ggcttattagatccattgatcccctaaataatttcaagttttcattttg 8795986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 18442255 - 18442311
Alignment:
Q  193 atttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||||| ||||||    
T  18442255 atttgatccattggtcctctaaataatttcaagttttcattttggtcccacaattaa 18442311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 19487329 - 19487385
Alignment:
Q  193 atttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||||| ||||||    
T  19487329 atttgatccattggtcctctaaataatttcaagttttcattttggtcccacaattaa 19487385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 12108101 - 12108047
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtccca 242  Q
    |||||||||||| || |  ||||| ||||||||||||||||||||||||||||||    
T  12108101 ggcttatttgattcaatagtcccttaaataatttcaagttttcattttggtccca 12108047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 18458772 - 18458714
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||  ||||  ||||||||||||||||| |||||||||||| ||||||    
T  18458772 ttatttgatccattagtcccctaaataatttcaagtttttattttggtcccacaattaa 18458714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 23443572 - 23443514
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| |||||||| || |||||| || ||||||||||||||||| ||||||    
T  23443572 ttatttgatccaatgatcccttaattaattttaacttttcattttggtcccaaaattaa 23443514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 3210049 - 3209988
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || || ||||| ||||||||| || ||||||||||||||||| ||||||    
T  3210049 ggcttatttgattcaatggtcccttaaataattttaaattttcattttggtcccacaattaa 3209988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 50809419 - 50809480
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | |||| |||| ||||| |||||||||||| ||||||||||||||||| ||||||    
T  50809419 ggcttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaa 50809480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 50866443 - 50866382
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||| | |||| |||| ||||| |||||||||||| ||||||||||||||||| ||||||    
T  50866443 ggcttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaa 50866382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 53194988 - 53194927
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| || || ||||| ||  ||||||||||||||||||||||||||||| ||||||    
T  53194988 ggcttatttaattcaatgatctcttgaataatttcaagttttcattttggtcccataattaa 53194927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 41544663 - 41544721
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||| ||| ||||| ||| | |||||||||||||||||||||||||||| | ||||||    
T  41544663 ttattagattcattggtccattaaataatttcaagttttcattttggtcctataattaa 41544721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 12105288 - 12105349
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||| || || || | |||||||||||||||||||||||| |||| |||| ||||||    
T  12105288 ggcttatttaattcaatggttcctcaaataatttcaagttttcatattggccccacaattaa 12105349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 34818112 - 34818145
Alignment:
Q  216 taatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  34818112 taatttcaagttttcattttggtcccacaattaa 34818145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 36176625 - 36176564
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||||| || ||||   | |||||||| |||||||||||||||||| ||||||    
T  36176625 ggcttatttgatccaatggtcccctgattaatttcatgttttcattttggtcccacaattaa 36176564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 37736199 - 37736138
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||| |||| ||||  ||||| ||||||||||| ||||||||||||||| || ||||||    
T  37736199 ggcttatgtgattcattagtcccttaaataatttcatgttttcattttggtctcacaattaa 37736138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 40364317 - 40364378
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||||||||||| | || | ||  |||||||||||||||||||||||||||| | ||||||    
T  40364317 ggcttatttgatctaatggttccctaaataatttcaagttttcattttggtcctaaaattaa 40364378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 53187557 - 53187605
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttg 236  Q
    ||||||||||||| | || ||||  ||||||||||||||||||||||||    
T  53187557 ggcttatttgatcgaatggtcccctaaataatttcaagttttcattttg 53187605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 18813 - 18864
Alignment:
Q  191 ttatttgatccattgatccctcaaataatttcaagttttcattttggtccca 242  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  18813 ttatttgatccattgatcctttaaataattttaagttttcattttggtccca 18864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 109863 - 109802
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||||||| || || ||||| |||||||||||||||||||||||||||| | ||||||    
T  109863 ggcttatttgattcaatggtcccttaaataatttcaagttttcattttggtcctacaattaa 109802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 43680 - 43632
Alignment:
Q  201 cattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| ||||||    
T  43680 cattggtccctcaaataattttaagtttttattttggtcccataattaa 43632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 1184 - 1149
Alignment:
Q  207 tccctcaaataatttcaagttttcattttggtccca 242  Q
    |||||||||||||||| |||||||||||||||||||    
T  1184 tccctcaaataatttccagttttcattttggtccca 1149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 2593 - 2533
Alignment:
Q  188 ggcttatttgatccattgatccctcaaataatttcaagttttcattttggtcccagaattaa 249  Q
    |||||||| |||| |||| |||||||| ||||||| | ||||||||||||||||| ||||||    
T  2593 ggcttattagatcaattggtccctcaattaatttcca-ttttcattttggtcccacaattaa 2533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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