View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_high_14 (Length: 259)
Name: NF9993_high_14
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42944446 - 42944205
Alignment:
| Q |
1 |
cattctttatcatctgaaattaactcaattatgttttagaacaaaaataagttgttaattgtatgcttcaaaaagtttaaagtttgtcctcggtctnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944446 |
cattctttatcatctgaaattaactcaattatgttttagaacaaaattaagttgttaattgtatgcttcaaaaagtttaaagtttgtcctcggtcgaaaa |
42944347 |
T |
|
| Q |
101 |
nnnntcaatttcaggaatcaaattgaggactattttgtcgtggtgacaccatcaatacagctaaaactttggaaccctttattctttcacagtactattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42944346 |
aaaatcaatttcaggaatcaaattgaggactattttgtcgtggtgacaccatcaatacagctaaaactttg-aaccctttattctttcacagtactattg |
42944248 |
T |
|
| Q |
201 |
tctcttgtcaatcaagcaaggcttgctacaggtgctttctgat |
243 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42944247 |
tctcttgtcaatcaagcaaggcttactacaggtgctttctgat |
42944205 |
T |
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