View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_high_15 (Length: 254)
Name: NF9993_high_15
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 38442785 - 38443023
Alignment:
| Q |
14 |
caaagggtttgcaggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatataaatggcatgggataagttacatggcttat |
113 |
Q |
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| T |
38442785 |
caaagggtttgcaggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatataaatgggatgggataagttaaatggcttat |
38442884 |
T |
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| Q |
114 |
cnnnnnnnnttcacgtgaaaagttaacaaacaacatggataagaattttcacattcccatagtatttggaaaattcggttagtcaaactatatttgccat |
213 |
Q |
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| T |
38442885 |
caaaaaaaattcacgtgaaaagttaacaaacaacatg-ataagaattttcacattcccatagtatttggaaaattcggtaagtccaactata-ttgccat |
38442982 |
T |
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| Q |
214 |
agtttatttatttaaaactctctttcattcccccctaatat |
254 |
Q |
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| T |
38442983 |
agtttatttatttaaaactctctttcattcccccctaatat |
38443023 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 53352723 - 53352659
Alignment:
| Q |
19 |
ggtttgcaggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatat |
83 |
Q |
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| T |
53352723 |
ggtttgaaggtaggtttgtgcgatatacatggtaatataattgggataagttatatgccttatat |
53352659 |
T |
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