View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_high_2 (Length: 477)
Name: NF9993_high_2
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_2 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 69 - 477
Target Start/End: Complemental strand, 48533500 - 48533060
Alignment:
| Q |
69 |
accttcattattctgatcgcaatgtgacaattgcggtatcttctttagcaatttgctt---------------------ctttagcctcgcaagagacct |
147 |
Q |
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| T |
48533500 |
acctacattattctgatcgcaatgtgacaattgcggtatattctttagcaatttgcttctttgcaagtggcgccttcttctttagcctcgcaagagacct |
48533401 |
T |
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| Q |
148 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
247 |
Q |
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| T |
48533400 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
48533301 |
T |
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| Q |
248 |
tcttacatcatcaactccgcagca----ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatg-ttttg |
342 |
Q |
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| T |
48533300 |
tctta---catcaactccgcagcaccagccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatgtttttg |
48533204 |
T |
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| Q |
343 |
ttattgttggtttagttcatgg---------aacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatgt |
433 |
Q |
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| T |
48533203 |
ttattgttggtttggttcatggaacaaacaaaacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatat |
48533104 |
T |
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| Q |
434 |
attaaatgcaattcacggggctttggcatcaactcaatcaaact |
477 |
Q |
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| T |
48533103 |
attaaatgcaattcacggggctttggcatcaactcaatcaaact |
48533060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 48533583 - 48533527
Alignment:
| Q |
15 |
ttcatttcatttcagggcttacgtcgattactactttgttgcggttattacggcacc |
71 |
Q |
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| T |
48533583 |
ttcatttcatttcagggcttacgtcgattactactttgttgcggttattatggcacc |
48533527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 48536336 - 48536225
Alignment:
| Q |
144 |
acctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgt |
243 |
Q |
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| T |
48536336 |
acctctctcacatagatcagatcaacactcgtagattccgggtcctcaggctattggg-tatcttacatctctatgtggcttatgtttattattcactgt |
48536238 |
T |
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| Q |
244 |
ggtatcttacatc |
256 |
Q |
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| T |
48536237 |
ggtaacttacatc |
48536225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 48536193 - 48536082
Alignment:
| Q |
267 |
cagcaccagcctagcctagttctgttgtt-----gttcttt-----aggctgtttctaaaagcattctagtatagtatatgttttgttattgttggttta |
356 |
Q |
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| T |
48536193 |
cagcaccagcctagcctagttctgttgttacgttgttctttggtttaggctgtttataaaagcattccagtatag--tatgtcttgttattgttgg-ttg |
48536097 |
T |
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| Q |
357 |
gttcatggaacaaac |
371 |
Q |
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| T |
48536096 |
gttcatggaacaaac |
48536082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 477
Target Start/End: Complemental strand, 48535940 - 48535900
Alignment:
| Q |
437 |
aaatgcaattcacggggctttggcatcaactcaatcaaact |
477 |
Q |
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| T |
48535940 |
aaatgcaattcacggggcttgggcatcgactcaataaaact |
48535900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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