View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9993_high_23 (Length: 242)
Name: NF9993_high_23
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 6117179 - 6116960
Alignment:
| Q |
9 |
tggtgttaagcaggggaagcttctataaagaatgagaattgatgtggaaattgaaatgaaaagtgaacttataatgttgtggtcaacaacagctttgttg |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6117179 |
tggtgttaagctggggaagcttctataaagaatgagaattgatgtggaaattgtaatgaaaagtgaacttataatgttgtggtcaacaacagctttgttg |
6117080 |
T |
|
| Q |
109 |
gggaccattgttttgatgtccaaannnnnnnnnnnnnnnnnnnnngtatggaatgattaaaataaggttataaacaaaattggaaggcttaagttttgat |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6117079 |
gggaccattgttttgatgtccaaattctttttctttctttcttttgtatggaatgattaaaataaggttatgaacaaaattgaaaggcttaagttttgat |
6116980 |
T |
|
| Q |
209 |
ataattattcatgataaaag |
228 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6116979 |
ataattattcatgataaaag |
6116960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 6119874 - 6119951
Alignment:
| Q |
24 |
gaagcttctataaagaatgagaattgat----gtggaaattgaaatgaaaagtgaacttataatgttgtggtcaacaa |
97 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||| ||||||||||| | ||||||||||||| |||||| |
|
|
| T |
6119874 |
gaaggttctataaagaatgagaattaattaaagtggaaattgtaatgaaaagtgtaagtataatgttgtggacaacaa |
6119951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University