View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_high_24 (Length: 240)
Name: NF9993_high_24
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_24 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 2796187 - 2796409
Alignment:
| Q |
18 |
ttatgaatcaacaacttcctattgagagccagtttatttccaagctggccgatcagctgaatgcggaaattgttctcggtaccgttcaaaatgcgaagga |
117 |
Q |
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| T |
2796187 |
ttatgaatcaacaacttcctattgagagccagtttatttccaagctggccgatcagctgaatgcggaaattgttctcggtaccgttcaaaatgcgaagga |
2796286 |
T |
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| Q |
118 |
agcttgcaattggatcggatacacttacttgtacgtgcgtatgtcaaggaatccttctctgtatggtttagcaccggatgttgttatgcgggatataaca |
217 |
Q |
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| T |
2796287 |
agcttgcaattggatcggatacacttacttgtacgtgcgtatgtcaaggaatccttctctgtatggtttagcaccggatgttgttatgcgggatataaca |
2796386 |
T |
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| Q |
218 |
ttggaggagaggagggctgattt |
240 |
Q |
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| T |
2796387 |
ttggaggagaggagggctgattt |
2796409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 29263702 - 29263922
Alignment:
| Q |
20 |
atgaatcaacaacttcctattgagagccagtttatttccaagctggccgatcagctgaatgcggaaattgttctcggtaccgttcaaaatgcgaaggaag |
119 |
Q |
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| T |
29263702 |
atgaaccaacaacttcccatcgagagccagtttatttccaagctggctgatcagctgaatgcagagattgttctcggtacagttcagaatgcaaaggaag |
29263801 |
T |
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| Q |
120 |
cttgcaattggatcggatacacttacttgtacgtgcgtatgtcaaggaatccttctctgtatggtttagcaccggatgttgttatgc-gggatataacat |
218 |
Q |
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| T |
29263802 |
cctgtcattggattggatacacgtacctgtatgttcgcatgttgaggaatccgtctctttacgggttagcaccagatg-tcctatccagagatataacat |
29263900 |
T |
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| Q |
219 |
tggaggagaggagggctgattt |
240 |
Q |
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| T |
29263901 |
tggaggaaaggagggctgattt |
29263922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 29189031 - 29188951
Alignment:
| Q |
40 |
tgagagccagtttatttccaagctggccgatcagctgaatgcggaaattgttctcggtaccgttcaaaatgcgaaggaagc |
120 |
Q |
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| T |
29189031 |
tgagagtcagtttatttctaagctagctgatcagctgaatgcagagattgttctcggtacagttcaaaatgtgaaggaagc |
29188951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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