View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9993_high_26 (Length: 238)
Name: NF9993_high_26
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_26 |
 | |
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| [»] scaffold0017 (2 HSPs) |
| | |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8341611 - 8341395
Alignment:
| Q |
1 |
taattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8341611 |
taattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaata |
8341512 |
T |
|
| Q |
101 |
aagatgagattctctaatggatgtttatattcttatacaaacacacacacatatatatatagaaaattatgtttaaggaaggtgtattttcctgcttcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8341511 |
aagatgagattctctaatggatgtttatattcttatacaaacacacacacatata--tatagaaaattgtgtttaaggaaggtgtattttcctgcttcct |
8341414 |
T |
|
| Q |
201 |
tcttatcttaaacctgtaa |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8341413 |
tcttatcttaaacctgtaa |
8341395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 26727201 - 26727089
Alignment:
| Q |
10 |
ttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgaga |
109 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||| |||| ||| |||| ||||||||| |||||| ||||||||||||||||||||||| | |
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|
| T |
26727201 |
ttgagttgaacccaacaatggaagacaacaccaacaatgcatagaatataagaataatatagtttctcatcataatttcaacaacaaaataaagatgggt |
26727102 |
T |
|
| Q |
110 |
ttctctaatggat |
122 |
Q |
| |
|
||||||||||||| |
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|
| T |
26727101 |
ttctctaatggat |
26727089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 8333013 - 8332947
Alignment:
| Q |
157 |
atatagaaaattatgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaatttt |
223 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8333013 |
atatagaaaattgtgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaatttt |
8332947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 44786165 - 44786280
Alignment:
| Q |
10 |
ttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgaga |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||| |
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|
| T |
44786165 |
ttgagttgaacccagcaatgaaggagaacaccaacaatgcatgtaatgtaataatattatagtttctcatcatcatttcaaagacaaaataaagatgaga |
44786264 |
T |
|
| Q |
110 |
ttctctaatggatgtt |
125 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
44786265 |
ttctcttatggatgtt |
44786280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 44144577 - 44144468
Alignment:
| Q |
11 |
tgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagat |
110 |
Q |
| |
|
||||||||||| | ||||| |||| ||||||||||||||||| |||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
44144577 |
tgagttgaacctatcaatggaggataacaccaacaatgcatgtaatgcaataatattatagtttctcatcatcatttcaacaacaaaataaagatgagat |
44144478 |
T |
|
| Q |
111 |
tctctaatgg |
120 |
Q |
| |
|
|||||||||| |
|
|
| T |
44144477 |
tctctaatgg |
44144468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 44611417 - 44611310
Alignment:
| Q |
13 |
agttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattc |
112 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| |||| |
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|
| T |
44611417 |
agttgaacccaacaatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattc |
44611318 |
T |
|
| Q |
113 |
tctaatgg |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
44611317 |
tctaatgg |
44611310 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 29229002 - 29229106
Alignment:
| Q |
14 |
gttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattct |
113 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||| ||| ||||| ||||| |
|
|
| T |
29229002 |
gttgaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttctcatcatcatttcaacaacaaagtaatgatgacattct |
29229101 |
T |
|
| Q |
114 |
ctaat |
118 |
Q |
| |
|
||||| |
|
|
| T |
29229102 |
ctaat |
29229106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 29342301 - 29342405
Alignment:
| Q |
14 |
gttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattct |
113 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||| ||| ||||| ||||| |
|
|
| T |
29342301 |
gttgaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttctcatcatcatttcaacaacaaagtaatgatgacattct |
29342400 |
T |
|
| Q |
114 |
ctaat |
118 |
Q |
| |
|
||||| |
|
|
| T |
29342401 |
ctaat |
29342405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 29229191 - 29229246
Alignment:
| Q |
170 |
tgtttaaggaaggtgt--attttcctgcttccttcttatcttaaacctgtaatttt |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
29229191 |
tgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaatttt |
29229246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 29342491 - 29342546
Alignment:
| Q |
170 |
tgtttaaggaaggtgt--attttcctgcttccttcttatcttaaacctgtaatttt |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
29342491 |
tgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaatttt |
29342546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 173525 - 173423
Alignment:
| Q |
13 |
agttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattc |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||| || || |||||||||||| |
|
|
| T |
173525 |
agttgaacccaacaatgaaggacaacaccaacagtgcatgtaatgtaataatattatagtttctcatcattatttca-----aacattaagatgagattc |
173431 |
T |
|
| Q |
113 |
tctaatgg |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
173430 |
tctaatgg |
173423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 168518 - 168405
Alignment:
| Q |
11 |
tgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaat-aaagatgaga |
109 |
Q |
| |
|
||||||||||||| ||||| || ||||||| ||||||||||| |||||| |||| ||||||||| |||||| |||||||| |||||| ||| | ||| |
|
|
| T |
168518 |
tgagttgaacccaacaatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttctcatcatcatttcaactgcaaaataaaaaaagagg |
168419 |
T |
|
| Q |
110 |
ttctctaatggatg |
123 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
168418 |
ttctctaatggatg |
168405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 30274 - 30387
Alignment:
| Q |
11 |
tgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaat-aaagatgaga |
109 |
Q |
| |
|
||||||||||||| ||||| || ||||||| ||||||||||| |||||| |||| ||||||||| |||||| |||||||| |||||| ||| | ||| |
|
|
| T |
30274 |
tgagttgaacccaacaatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttctcatcatcatttcaactgcaaaataaaaaaagagg |
30373 |
T |
|
| Q |
110 |
ttctctaatggatg |
123 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30374 |
ttctctaatggatg |
30387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 29508439 - 29508529
Alignment:
| Q |
12 |
gagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaa |
102 |
Q |
| |
|
|||||||||||| |||||||| | ||||| |||||||||||||| ||| ||| ||||||||| |||||| |||| | |||||||||||| |
|
|
| T |
29508439 |
gagttgaacccaacaatgaagaataacacaaacaatgcatggaacataagaatcatatagtttctcatcataatttgaccaacaaaataaa |
29508529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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