View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_high_3 (Length: 456)
Name: NF9993_high_3
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 62 - 442
Target Start/End: Complemental strand, 9003055 - 9002675
Alignment:
| Q |
62 |
ggtatatagttagctagttatttatattaccttgaatgtcccatggttcaagcttgttgagatcaacatcacgaataacatcaaggtcaatcttctcata |
161 |
Q |
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| T |
9003055 |
ggtatatagttagctagttatttatattaccttgaatgtcccatggttcaagcttgttgagatcaacatcacgaataacatcaaggtcaatcttctcata |
9002956 |
T |
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| Q |
162 |
agagacttttttcctcaagtagtattgaagaagctcttcttcagtaggatgaaaccggaatccaggaggaacttgagattgtccattaacagatatactc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9002955 |
agagacttttttcctcaagtagtattgaagaagctcttcttcagtaggatgaaaccggaatccaggaggaacttgagattgtccattaacagatatactc |
9002856 |
T |
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| Q |
262 |
atgttatcaggcattaaggtaactaaagttgttaagagagagtggtagcaaaagaagataagctaggtagctatgtagtggttctagattttcacaaggg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9002855 |
atgttatcaggcattaaggtaactaaagttgttaagagagagtggtagcaaaagaagataagctaggtagctatgtagtggttctagattttcacaaggg |
9002756 |
T |
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| Q |
362 |
acccaaaaagttgagagaacacattcaaaacaggtaggaaagaaaggaaaggaaatgtgaaagataatgaggtggtgtgtg |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9002755 |
acccaaaaagttgagagaacacattcaaaacaggtaggaaagaaaggaaaggaaaggtgaaagataatgaggtggtgtgtg |
9002675 |
T |
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