View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9993_high_7 (Length: 345)

Name: NF9993_high_7
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9993_high_7
NF9993_high_7
[»] chr6 (3 HSPs)
chr6 (20-335)||(5539842-5540157)
chr6 (20-298)||(5550663-5550936)
chr6 (142-211)||(34589807-34589876)
[»] chr3 (3 HSPs)
chr3 (148-222)||(15801456-15801529)
chr3 (138-223)||(15801699-15801784)
chr3 (142-225)||(26936779-26936860)
[»] chr1 (5 HSPs)
chr1 (138-223)||(38474803-38474888)
chr1 (165-223)||(4557003-4557061)
chr1 (140-197)||(12287503-12287560)
chr1 (138-203)||(5085820-5085885)
chr1 (138-206)||(46631260-46631328)
[»] chr2 (8 HSPs)
chr2 (138-222)||(41513781-41513865)
chr2 (138-211)||(8951368-8951441)
chr2 (142-219)||(2420000-2420077)
chr2 (138-222)||(33459162-33459246)
chr2 (138-218)||(42510694-42510774)
chr2 (163-218)||(38125395-38125450)
chr2 (223-278)||(45209490-45209545)
chr2 (189-222)||(41066389-41066422)
[»] chr8 (3 HSPs)
chr8 (143-222)||(13054302-13054381)
chr8 (161-211)||(11567573-11567623)
chr8 (145-200)||(37384734-37384789)
[»] chr5 (1 HSPs)
chr5 (138-206)||(35138563-35138631)
[»] chr4 (1 HSPs)
chr4 (138-222)||(20642336-20642420)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 5540157 - 5539842
Alignment:
Q  20 atcaggaacctgtatagagtaagatttcactacttttgatatatgattttcttctaaacgggtcggtgaattaactccctcaaatttgatattatatatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540157 atcaggaacctgtatagagtaagatttcactacttttgatatatgattttcttctaaacgggtcggtgaattaactccctcaaatttgatattatatatt 5540058  T
Q  120 ttagtccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540057 ttagtccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattta 5539958  T
Q  220 ctcgaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaatttggcctcggttgcaaacagctttccaacgaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5539957 ctcgaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaatttggcctcggttgcaaacagctttccaacgaa 5539858  T
Q  320 tagtaccatgcctttg 335  Q
    ||||||||||||||||    
T  5539857 tagtaccatgcctttg 5539842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 5550663 - 5550936
Alignment:
Q  20 atcaggaacctgtatagagtaagatttcactacttttgatatatgattttcttctaaacgggtcggtgaattaactccctcaaatttgatattatatatt 119  Q
    |||||||| |||||||||||||||| |||||||| ||||||||| |||| ||||||| ||||| ||| |||  | |||||||||||||||||| |  | |    
T  5550663 atcaggaagctgtatagagtaagatatcactactcttgatatataatttccttctaagcgggttggtcaatgtagtccctcaaatttgatattttgcact 5550762  T
Q  120 ttagtccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattta 219  Q
    ||||| ||||||||||||| ||||  |||||||| |||   |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  5550763 ttagtacttgaaattgtaaggggatgaaattgcttttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctattta 5550862  T
Q  220 ctcgaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaatttggcctcggt 298  Q
    |||||||||||   ||||||||  |||||||||||||||||||||||||||||||||||||| || ||||||| |||||    
T  5550863 ctcgaaattaa---tatacact--cacatttcctttttctgtgtggttacagtccaagtgcgtcgcatttggcatcggt 5550936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 34589876 - 34589807
Alignment:
Q  142 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 211  Q
    ||||||||||||| |||||||| |||||||| | |||| || ||||  |||||||| || ||||||||||    
T  34589876 gactaaattgctagttcacaaaattgagggactaaatttaccgaccaatacaattttaaggactaaaatg 34589807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 15801529 - 15801456
Alignment:
Q  148 attgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 222  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||||||| |||||||||||    
T  15801529 attgctatttca-aaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctatttactc 15801456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 15801699 - 15801784
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 223  Q
    ||||||| ||||||| || |  ||||||||||| |   ||| ||| |||| |||||||||||| ||||||||||||||||||||||    
T  15801699 aagggacaaaattgcgatcttgcaaatttgaggaacaaaatcgaccgacctttacaatttcaaggactaaaatgtctatttactcg 15801784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 26936860 - 26936779
Alignment:
Q  142 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcgaa 225  Q
    |||| |||||||||||  ||||||| ||||| |||||  |  |||||||| ||| |||| ||||||||||| ||||||||||||    
T  26936860 gactgaattgctattttgcaaatttcagggactgaatcaa--gacccttaaaatgtcaaagactaaaatgtttatttactcgaa 26936779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 38474803 - 38474888
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 223  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||   || |||||||||||| ||||||||||| ||||||||||    
T  38474803 aagggactaaattgctatttctcaaattttagggactaaattgaccacccgttacaatttcaaggactaaaatgtatatttactcg 38474888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 4557061 - 4557003
Alignment:
Q  165 ttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 223  Q
    |||||||||| ||||||| |||||||||||||||||  |||| |||||| |||||||||    
T  4557061 ttgagggattaaattgaccgacccttacaatttcaagaactataatgtcaatttactcg 4557003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 12287503 - 12287560
Alignment:
Q  140 gggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaattt 197  Q
    |||||||||||||||||| |||||||||||||||| |||| ||  || ||||||||||    
T  12287503 gggactaaattgctatttaacaaatttgagggattaaattaaccaactcttacaattt 12287560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 5085885 - 5085820
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatga 203  Q
    |||||||||||||| ||||||| ||||| |||||| || ||||||  | || ||||||||||||||    
T  5085885 aagggactaaattgatatttcataaattcgagggactggattgacccaaccgtacaatttcaatga 5085820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 46631328 - 46631260
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgacta 206  Q
    ||||||||||| | ||| ||| |||||||||  |||| ||||||| |||||||| |||||||| |||||    
T  46631328 aagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta 46631260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 41513865 - 41513781
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 222  Q
    |||||||||| |||||||||  ||||||||| ||| | ||||| ||||||||| ||| |||| ||||||||||| ||||||||||    
T  41513865 aagggactaacttgctattttgcaaatttgaaggactaaattggctgacccttgcaaattcagtgactaaaatgcctatttactc 41513781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 8951368 - 8951441
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 211  Q
    |||||||||| |||||||||||||||||||  ||| | ||||||| |||||||| |||||||| | ||||||||    
T  8951368 aagggactaatttgctatttcacaaatttggaggactaaattgacagacccttataatttcaaggtctaaaatg 8951441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 2420000 - 2420077
Alignment:
Q  142 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattta 219  Q
    ||||||||||||||||||||||||||||| | ||| || |||||   |||||||||| | |||||||||  |||||||    
T  2420000 gactaaattgctatttcacaaatttgaggaactgagttaactgattgttacaatttctaggactaaaatacctattta 2420077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 33459246 - 33459162
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 222  Q
    |||||||| ||||||||||||| |||| ||||| | | |||| || | |  |||||||||||| |||||||||||| ||||||||    
T  33459246 aagggactgaattgctatttcaaaaatatgaggaactaaattaaccgcctgttacaatttcaaggactaaaatgtcgatttactc 33459162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 42510774 - 42510694
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattt 218  Q
    ||||||||||| | ||||||| || |||| | ||| | ||||||| |||| |||||||||||| |||||||||| ||||||    
T  42510774 aagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttacaatttcaaggactaaaatgcctattt 42510694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 38125395 - 38125450
Alignment:
Q  163 atttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattt 218  Q
    |||| ||||||||||||||| |||| ||||||||||||  | ||||||||||||||    
T  38125395 atttcagggattgaattgaccgaccattacaatttcaaatattaaaatgtctattt 38125450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 45209545 - 45209490
Alignment:
Q  223 gaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagt 278  Q
    |||||||| ||||||||||||||  |||||||||  |||||||||||||| |||||    
T  45209545 gaaattaatattatacactcacatgtttccttttcatgtgtggttacagttcaagt 45209490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 41066422 - 41066389
Alignment:
Q  189 ttacaatttcaatgactaaaatgtctatttactc 222  Q
    ||||||||||||||||||||||| ||||||||||    
T  41066422 ttacaatttcaatgactaaaatgcctatttactc 41066389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 13054381 - 13054302
Alignment:
Q  143 actaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 222  Q
    ||||||||||||||||||| |||||||||| | ||||||| | |||||  |||||||| || ||||||| ||||||||||    
T  13054381 actaaattgctatttcacatatttgagggactaaattgaccggcccttgaaatttcaacgaataaaatgcctatttactc 13054302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 11567623 - 11567573
Alignment:
Q  161 aaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 211  Q
    |||||||||||| | ||||||| ||||||||||||||||| ||||||||||    
T  11567623 aaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatg 11567573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 37384789 - 37384734
Alignment:
Q  145 taaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaa 200  Q
    |||||||| ||||  ||||||||||||| | |||||||||||| ||||||||||||    
T  37384789 taaattgcaattttgcaaatttgagggactaaattgactgacctttacaatttcaa 37384734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 35138563 - 35138631
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgacta 206  Q
    ||||||||||||||||||||| |||||||||   | | ||||||| || ||||| |||||||| |||||    
T  35138563 aagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta 35138631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 20642420 - 20642336
Alignment:
Q  138 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 222  Q
    |||||||| ||||||||| |  |||||||||||||   |||||| ||||||||||||||| || || || |||||  ||||||||    
T  20642420 aagggactcaattgctatgttgcaaatttgagggacgaaattgattgacccttacaatttgaaggattagaatgttgatttactc 20642336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University