View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_high_9 (Length: 332)
Name: NF9993_high_9
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 9562733 - 9562846
Alignment:
| Q |
1 |
acaaattcatgaaaccttaaacaaaccaaagtgttggaacggaacatacctcaggctcagactctgaacacaggtgagaggttgttcagttacatgctgt |
100 |
Q |
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| T |
9562733 |
acaaattcatgaaactttaaacaagccaaagtgttggaacggaacatacctcaggctcagactctgaacacaggtgagaggttgttcagttacatgctgt |
9562832 |
T |
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| Q |
101 |
gttctgtgacagaa |
114 |
Q |
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| T |
9562833 |
attctgtgacagaa |
9562846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 9562971 - 9563084
Alignment:
| Q |
204 |
tattttttagttatagtataacagtaaagaaatgcatatctaagaaaaaagttcatcgtatttagtcaaaaatataaaagttcatgg--tatatatcaat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9562971 |
tattttttagttatagtataacagtaaagaaatgcatatctaagaaaaaagttcatcgtatttagtcaaaaatataaaagttcatggtatatatatcaat |
9563070 |
T |
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| Q |
302 |
tatcctgttaatat |
315 |
Q |
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||||| |||||||| |
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| T |
9563071 |
tatccagttaatat |
9563084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 9570833 - 9570942
Alignment:
| Q |
1 |
acaaattcatgaaaccttaaacaaaccaaagtgttggaacggaacatacctcaggctcagactctgaacacaggtgagaggttgttcagttacatgctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||| |
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| T |
9570833 |
acaaattcatgaaaccttaaacaaaccaaagtgttggaacagaacatacctcagtatcagactctgaacac---tgagaggttgttcagttaaatgttgt |
9570929 |
T |
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| Q |
101 |
gttctgtgacaga |
113 |
Q |
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|||||||| |||| |
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| T |
9570930 |
gttctgtggcaga |
9570942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 207 - 315
Target Start/End: Original strand, 9571189 - 9571310
Alignment:
| Q |
207 |
tttttagttatagtataacagtaaagaaatgcatatct--aagaaaaaagttcatcgtatttagtcaaaaatataaaag-----------ttcatggtat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
9571189 |
tttttagttatagtataacagtaaagaaatgcatatcttaaaaaaaaaagttcatggtatttagtcaaaaaaataaaagttcacctaacattcatggtat |
9571288 |
T |
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| Q |
294 |
atatcaattatcctgttaatat |
315 |
Q |
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|||||||||||||||||||||| |
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| T |
9571289 |
atatcaattatcctgttaatat |
9571310 |
T |
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