View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9993_low_1 (Length: 518)

Name: NF9993_low_1
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9993_low_1
NF9993_low_1
[»] chr5 (3 HSPs)
chr5 (130-507)||(1985144-1985528)
chr5 (17-66)||(1985031-1985080)
chr5 (304-371)||(23151234-23151301)
[»] chr2 (2 HSPs)
chr2 (207-508)||(44657203-44657509)
chr2 (204-289)||(4244431-4244516)
[»] chr3 (2 HSPs)
chr3 (305-482)||(40851919-40852098)
chr3 (206-294)||(40851602-40851690)
[»] chr1 (5 HSPs)
chr1 (202-259)||(24439278-24439334)
chr1 (203-402)||(48097160-48097365)
chr1 (336-372)||(27466774-27466810)
chr1 (209-266)||(6352118-6352174)
chr1 (304-368)||(6352477-6352541)
[»] scaffold0996 (1 HSPs)
scaffold0996 (202-359)||(1490-1652)
[»] scaffold0067 (1 HSPs)
scaffold0067 (304-371)||(11033-11100)
[»] chr7 (3 HSPs)
chr7 (304-371)||(41147719-41147786)
chr7 (304-372)||(513816-513884)
chr7 (190-289)||(43970094-43970193)
[»] chr4 (2 HSPs)
chr4 (304-371)||(32499511-32499578)
chr4 (202-289)||(54421351-54421438)
[»] scaffold0007 (1 HSPs)
scaffold0007 (336-370)||(188461-188495)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 130 - 507
Target Start/End: Original strand, 1985144 - 1985528
Alignment:
Q  130 cactggctattagatgtaccgtaggatagggtttaaagtgtacgaagatannnnnnnnnn-agcaaa-gacaacattaattcatttcattcataa---tc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||| |||||||||||||||||||||||||||   ||    
T  1985144 cactggctattagatgtaccgtaggatagggtttaaagtgtacgaagatattattttttttagcaaaagacaacattaattcatttcattcataataatc 1985243  T
Q  225 aacgaatacaaaagtagttggcacataattgaaaatatggggctaggatgagataaggatgctctggctgtgcaatgagctattagcttgcctccgaaca 324  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1985244 aacgaatacaaaagtagttggcacataattgaaaatatggggttaggatgagataaggatgctctggctgtgcaatgagctattagcttgcctccgaaca 1985343  T
Q  325 tgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtgaaacaaatagcat 424  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1985344 tgcggcactaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtggaacaaatagcat 1985443  T
Q  425 atgatagagatttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggccactttgatagcttccaataagcctat 507  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  1985444 atgatagagatttgcaatccgtttcaaacaaagcagtgggcattacgtttgatatggccactttgatagcttccaataagcctat 1985528  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 1985031 - 1985080
Alignment:
Q  17 atattcaagaacgaacacacacacataatgcacatattcatgttaatatg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1985031 atattcaagaacgaacacacacacataatgcacatattcatgttaatatg 1985080  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 23151301 - 23151234
Alignment:
Q  304 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 371  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  23151301 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 23151234  T

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Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 207 - 508
Target Start/End: Complemental strand, 44657509 - 44657203
Alignment:
Q  207 ttcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatggggctaggatgagataaggatgctctggctgtgcaatgagc-- 304  Q
    ||||||||||| ||||||||| ||| ||||  ||||||| |||| ||||||| | |||| ||| ||||||||||||||||||| | | | ||||||        
T  44657509 ttcatttcatttataatcaacaaatgcaaat-tagttggtacatcattgaaattttggg-ctatgatgagataaggatgctctagttatacaatgaataa 44657412  T
Q  305 ---tattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagagg 401  Q
       |||||| || ||||| ||||||||  | || |||||||| ||||||||||||||||||| ||||||||| ||| |  |||||||||||||||||| |    
T  44657411 ctatattagtttacctccaaacatgcgatactacaaagtcggatctattaagtaagagacttttacattgaaagacgagatctccaaattcatttagaag 44657312  T
Q  402 aacctttgtgaaacaaatagcatatgatagagatttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggccactttgatagcttccaat 499  Q
    || ||||||| |||||||||||| |||||||||||||||||||||||||||||| | || | ||||| ||  ||||||| ||| ||||||| ||| ||||    
T  44657311 aatctttgtggaacaaatagcatctgatagagatttgcaatccgtttcaaacaatacagcgtgcattccgtttgatatgaccattttgataactttcaat 44657212  T
Q  500 aagcctatg 508  Q
    |||||||||    
T  44657211 aagcctatg 44657203  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 4244516 - 4244431
Alignment:
Q  204 taattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatat-ggggctaggatgagataaggatgctct 289  Q
    ||||||||||||||||||| ||| || ||| |||| || ||| |||||||||||||| |  | ||||||||||||||| ||||||||    
T  4244516 taattcatttcattcataaacaaagagtac-aaagaagatggtacataattgaaaatgtaagagctaggatgagataaagatgctct 4244431  T

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Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 305 - 482
Target Start/End: Original strand, 40851919 - 40852098
Alignment:
Q  305 tattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaac 404  Q
    |||||| |||||| |||||||| | || || | |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  40851919 tattagtttgcctacgaacatgagacactacatagtcaggtctattaaataagagacttctacattgaaagacaaggtctccaaattcatttagaggaac 40852018  T
Q  405 ctttgtgaaacaaatagcatatgatagagatttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggcca 482  Q
    ||||||| |||||||||||| || ||||||||||||||| ||||||||||||| |||| ||||| ||  |||||||||||    
T  40852019 ctttgtggaacaaatagcatctggtagagatttgcaatctgtttcaaacaaaatagtgtgcattccgtttgatatggcca 40852098  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 40851602 - 40851690
Alignment:
Q  206 attcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg-ctaggatgagataaggatgctctggctg 294  Q
    ||||||||| |||||||||||||||||| |||||||||||   ||||||||||| |||||| |||||||||||||| |||||||||||||    
T  40851602 attcatttcgttcataatcaacgaatac-aaagtagttggtcaataattgaaaacatggggactaggatgagataaagatgctctggctg 40851690  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 24439334 - 24439278
Alignment:
Q  202 attaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaa 259  Q
    |||||||||||||||||||||||||||||||| |||||||||   |||||||||||||    
T  24439334 attaattcatttcattcataatcaacgaatac-aaagtagttaaaacataattgaaaa 24439278  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 402
Target Start/End: Original strand, 48097160 - 48097365
Alignment:
Q  203 ttaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatg-gggctaggatgagataaggatgctctggctgtgcaatg 301  Q
    |||| |||||||||||||||||||| ||||| ||||||||||| |||| |||||||||| | ||||| |  ||| ||| |||||| || ||| | | |||    
T  48097160 ttaagtcatttcattcataatcaacaaatac-aaagtagttggtacattattgaaaatacgagggctggagtgatatatggatgccctagctattctatg 48097258  T
Q  302 ag------ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatt 395  Q
    ||      ||||| | | ||||||||||||||  || || |||||| |||||||| ||||||||| || ||||||| |  | ||  || |||||||||||    
T  48097259 agcaaaacctatttggtggcctccgaacatgcaacactacaaagtctggtctatttagtaagagatttttacattgtaaaataagatcaccaaattcatt 48097358  T
Q  396 tagagga 402  Q
    |||||||    
T  48097359 tagagga 48097365  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 27466810 - 27466774
Alignment:
Q  336 aaagtcgggtctattaagtaagagacttctacattga 372  Q
    |||||||||| ||||||||||||||||||||||||||    
T  27466810 aaagtcgggtttattaagtaagagacttctacattga 27466774  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 6352118 - 6352174
Alignment:
Q  209 catttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg 266  Q
    ||||||||||||| ||||||||||| ||||| ||||| |||  |||||||||||||||    
T  6352118 catttcattcatactcaacgaatac-aaagttgttggtacaatattgaaaatatgggg 6352174  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 6352477 - 6352541
Alignment:
Q  304 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctaca 368  Q
    ||||| ||||||||||||| ||||| || || ||| ||||| ||  |||||||||||||||||||    
T  6352477 ctatttgcttgcctccgaatatgcgacactacaaaatcgggactggtaagtaagagacttctaca 6352541  T

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Target: scaffold0996 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 359
Target Start/End: Original strand, 1490 - 1652
Alignment:
Q  202 attaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg-ctaggatgagataaggatgctctggctgtgcaat 300  Q
    ||||| |||||||||||||||| || || |||||| ||||  || |||  ||| ||||||||||| ||||||||| ||||||| ||||| ||  | | ||    
T  1490 attaagtcatttcattcataattaaggagtacaaa-gtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagctctagcaatactat 1588  T
Q  301 gagc-----tattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagag 359  Q
    ||||     ||||||||||||||||||||| || || || ||||||||||||||| || |||||    
T  1589 gagcaaccctattagcttgcctccgaacatacgacactacaaagtcgggtctattgagcaagag 1652  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 11033 - 11100
Alignment:
Q  304 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 371  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  11033 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 11100  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 41147786 - 41147719
Alignment:
Q  304 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 371  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  41147786 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 41147719  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 513884 - 513816
Alignment:
Q  304 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattga 372  Q
    |||||||||||||||| ||||| || || || ||||||||||||||| || ||||| ||  ||||||||    
T  513884 ctattagcttgcctccaaacatacgacactacaaagtcgggtctattgagcaagaggctcttacattga 513816  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 43970193 - 43970094
Alignment:
Q  190 agcaaagacaacattaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatat-ggggctaggatgagataaggatgctc 288  Q
    ||||||| ||| |||||| |||||| ||||||||||| |  ||| ||||||| ||| |||| || |||||||| |||||||||||  |||||||| ||||    
T  43970193 agcaaaggcaagattaatgcatttcgttcataatcaaagggtac-aaagtagatggtacatcatagaaaatatgggggctaggattggataaggacgctc 43970095  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 32499578 - 32499511
Alignment:
Q  304 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 371  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  32499578 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 32499511  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 54421351 - 54421438
Alignment:
Q  202 attaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg-ctaggatgagataaggatgctct 289  Q
    |||||||||| |||| || |||||| || |||||| |||||||  |||| || |||||||||||| |||||||| |||||||| |||||    
T  54421351 attaattcatatcatccaaaatcaaagagtacaaa-gtagttgttacatgatagaaaatatgggggctaggatgtgataaggaagctct 54421438  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 188461 - 188495
Alignment:
Q  336 aaagtcgggtctattaagtaagagacttctacatt 370  Q
    ||||||||||||| |||||||||||||||||||||    
T  188461 aaagtcgggtctaataagtaagagacttctacatt 188495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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