View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9993_low_11 (Length: 305)
Name: NF9993_low_11
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 2877034 - 2877321
Alignment:
| Q |
1 |
aaacttttattttctgtttttggaatttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877034 |
aaacttttattttctgttttcggaatttcgactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgc |
2877133 |
T |
|
| Q |
101 |
atttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877134 |
atttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatatt |
2877233 |
T |
|
| Q |
201 |
gatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccact |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877234 |
gatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccact |
2877321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 33 - 286
Target Start/End: Original strand, 2886833 - 2887086
Alignment:
| Q |
33 |
tggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgg |
132 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || |||| |
|
|
| T |
2886833 |
tggcaggaaatgaaggttcaaggggtactagaggatagattagtacttttgaagggtgttagtggtgcatttaggcctggtgttctcacagccttaatgg |
2886932 |
T |
|
| Q |
133 |
gtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaa |
232 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
2886933 |
gagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaa |
2887032 |
T |
|
| Q |
233 |
aaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatcca |
286 |
Q |
| |
|
||| |||||||| |||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
2887033 |
aaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatcca |
2887086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 36 - 286
Target Start/End: Complemental strand, 2897540 - 2897290
Alignment:
| Q |
36 |
caggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtg |
135 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| | |
|
|
| T |
2897540 |
caggaaatgaaggttcaaggtgtagtagaggatagattagtacttttgaagggtgttagtggtgcatttaggcctggtgttctcacagcattaatgggag |
2897441 |
T |
|
| Q |
136 |
ttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaa |
235 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||| ||||| | |||||||||||| || |||| ||||| |
|
|
| T |
2897440 |
ttagtggagctggtaaaactactttaatggatgttttggctggtagaaaaaccggtggttatatcgatggcaccataaaaatttcaggctaccttaaaag |
2897341 |
T |
|
| Q |
236 |
gcaagaaacatttgctagaatctctggctattgtgagcagaatgatatcca |
286 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
2897340 |
acaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatcca |
2897290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 25 - 286
Target Start/End: Complemental strand, 44223473 - 44223212
Alignment:
| Q |
25 |
atttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagc |
124 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | ||| || || |||||||||||||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
44223473 |
atttcaactggcaggaaatgaaggagcaaggtgttagagaagacagattagtgcttttgaagggtgttagtggtgcattcaggcccggtgttctcacagc |
44223374 |
T |
|
| Q |
125 |
tttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggt |
224 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||||||||||| ||| || ||||||| |
|
|
| T |
44223373 |
tttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctggg |
44223274 |
T |
|
| Q |
225 |
taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatcca |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
44223273 |
taccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaatgatatcca |
44223212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 44211311 - 44211053
Alignment:
| Q |
25 |
atttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagc |
124 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | |||||| || ||||||||||||||||| ||||| |||||||| || || |||||||||||||| |
|
|
| T |
44211311 |
atttcaactggcaggaaatgaaggagcaaggtgttacagaggacagactagtgcttttgaagggtgttagcggtgcattcaggcccggtgttctcacagc |
44211212 |
T |
|
| Q |
125 |
tttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggt |
224 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||||||||||| ||| || ||||||| |
|
|
| T |
44211211 |
tttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctggg |
44211112 |
T |
|
| Q |
225 |
taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
44211111 |
taccctaaaaagcaagaaacatttgctagaatatctggctactgtgaacagaatgatat |
44211053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 286
Target Start/End: Complemental strand, 44234295 - 44234034
Alignment:
| Q |
25 |
atttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagc |
124 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | |||||| || |||||||||||||||| |||||||| ||||| || |||||||| || || || |
|
|
| T |
44234295 |
atttcaactggcaggaaatgaaggagcaaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcctggtgtacttacggc |
44234196 |
T |
|
| Q |
125 |
tttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggt |
224 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||||||||||| ||| || ||||||| |
|
|
| T |
44234195 |
tttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctggg |
44234096 |
T |
|
| Q |
225 |
taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatcca |
286 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
44234095 |
tatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatcca |
44234034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 43457796 - 43457689
Alignment:
| Q |
95 |
tggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggt |
194 |
Q |
| |
|
||||||||| || ||||| ||||| || ||||| ||||| |||||||||||||| || || |||||||||||||| || ||||| ||||| || ||||| |
|
|
| T |
43457796 |
tggtgcattcaggcctggagttctaacggctttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggt |
43457697 |
T |
|
| Q |
195 |
tatattga |
202 |
Q |
| |
|
|| ||||| |
|
|
| T |
43457696 |
tacattga |
43457689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 102 - 288
Target Start/End: Complemental strand, 39589547 - 39589361
Alignment:
| Q |
102 |
tttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattg |
201 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| || | || ||||| |||||||||||| ||||||| | ||||||| |||||| |||| ||||||| |
|
|
| T |
39589547 |
tttaggcctggtgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttgttggatgtgctttctggtagaaaaactggtggatatattg |
39589448 |
T |
|
| Q |
202 |
atgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccact |
288 |
Q |
| |
|
||||| ||| | ||||||||| || ||||| ||||||||||||||||| ||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
39589447 |
gtgggaccatcacaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccact |
39589361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 286
Target Start/End: Complemental strand, 39547743 - 39547535
Alignment:
| Q |
78 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
177 |
Q |
| |
|
||||||||||| || ||||| || || ||||||||||||||||| ||| |||||||||| | ||| || || ||||| ||| ||||||||||| | ||| |
|
|
| T |
39547743 |
cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctg |
39547644 |
T |
|
| Q |
178 |
gtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaa |
277 |
Q |
| |
|
|||| |||||| |||| ||||||| ||||| ||| | ||| ||||| || || || |||||||| || ||||| ||||| || || || |||||||| | |
|
|
| T |
39547643 |
gtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaac |
39547544 |
T |
|
| Q |
278 |
tgatatcca |
286 |
Q |
| |
|
||||||||| |
|
|
| T |
39547543 |
tgatatcca |
39547535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 39365889 - 39366139
Alignment:
| Q |
36 |
caggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtg |
135 |
Q |
| |
|
|||||||||| | | | |||||| || ||||||| | |||| ||| ||||||| ||||||| || || ||||| ||||||||||| ||| ||||||||| |
|
|
| T |
39365889 |
caggaaatgagaaaccgaggtgttattgaggataagttagttcttctgaagggtcttagtggagctttcagaccaggtgttctcacggctctgatgggtg |
39365988 |
T |
|
| Q |
136 |
ttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaa |
235 |
Q |
| |
|
| | || ||||| ||||| ||| |||||||||| | ||||||| |||||| |||| ||||||| ||||| ||| | ||| ||||| || || || || |
|
|
| T |
39365989 |
tgaccggtgctggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaa |
39366088 |
T |
|
| Q |
236 |
gcaagaaacatttgctagaatctctggctattgtgagcagaatgatatcca |
286 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || || ||||| | ||||||||| |
|
|
| T |
39366089 |
gcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatcca |
39366139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 288
Target Start/End: Complemental strand, 39564522 - 39564312
Alignment:
| Q |
78 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
177 |
Q |
| |
|
||||||||||| || ||||| || || ||||||||||||||||| ||| | |||||||| | || ||||| ||||| ||| |||||||||| | ||| |
|
|
| T |
39564522 |
cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg |
39564423 |
T |
|
| Q |
178 |
gtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaa |
277 |
Q |
| |
|
|||||||||| | || ||||||| ||||| ||| | |||||| || | || || ||||||||||| ||||| ||||| ||||| || |||||||| || |
|
|
| T |
39564422 |
gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa |
39564323 |
T |
|
| Q |
278 |
tgatatccact |
288 |
Q |
| |
|
||||||||||| |
|
|
| T |
39564322 |
tgatatccact |
39564312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 286
Target Start/End: Original strand, 39338563 - 39338786
Alignment:
| Q |
63 |
gaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttga |
162 |
Q |
| |
|
||||||| | |||| ||||||||||| || ||||| || || ||||| ||||||||||| ||| ||||||| | | || ||||| ||||| ||| ||| |
|
|
| T |
39338563 |
gaggataagttagttcttttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctga |
39338662 |
T |
|
| Q |
163 |
tggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctgg |
262 |
Q |
| |
|
||||||| | ||||||| |||||| |||| ||||||| ||||| ||| |||||||| || | || || ||||||||||| ||||| ||||| ||||| |
|
|
| T |
39338663 |
tggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgg |
39338762 |
T |
|
| Q |
263 |
ctattgtgagcagaatgatatcca |
286 |
Q |
| |
|
|| |||||||| | ||||||||| |
|
|
| T |
39338763 |
atactgtgagcaaactgatatcca |
39338786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 39353416 - 39353629
Alignment:
| Q |
73 |
tagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtatt |
172 |
Q |
| |
|
|||| ||||| ||||| || ||||| || || ||||| ||||||||||| ||| ||||||| | | ||| ||||| ||||| ||| | |||||||| | |
|
|
| T |
39353416 |
tagttcttttaaagggtgtaagtggagctttcagaccaggtgttctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgct |
39353515 |
T |
|
| Q |
173 |
ggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgag |
272 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||| ||| | |||||| || || || |||||||||||||| ||||| ||||| ||||| || |||||| |
|
|
| T |
39353516 |
ttctggtagaaaaaccggtggatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgag |
39353615 |
T |
|
| Q |
273 |
cagaatgatatcca |
286 |
Q |
| |
|
|| | ||||||||| |
|
|
| T |
39353616 |
caaactgatatcca |
39353629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 288
Target Start/End: Complemental strand, 39575309 - 39575123
Alignment:
| Q |
102 |
tttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattg |
201 |
Q |
| |
|
||||| || ||||||||||| || | |||||||| | ||| ||||| ||||| ||||||||||||||| | ||||||||||||| | | || |||||| |
|
|
| T |
39575309 |
tttaggccaggtgttctcactgcacttatgggtgtcactggtgctggcaaaacaactttgatggatgtacttgctggtaggaaaagtgggggatatatta |
39575210 |
T |
|
| Q |
202 |
atgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccact |
288 |
Q |
| |
|
||||| ||| | | |||| || | || |||||||||||||| ||||| ||||| || || || |||||||| |||||||| |||| |
|
|
| T |
39575209 |
gtgggaacatcacagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacact |
39575123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 39622324 - 39622194
Alignment:
| Q |
93 |
agtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtg |
192 |
Q |
| |
|
|||||| |||| ||||| | ||||||||||||| |||||||||| | ||| ||||| ||||| ||| ||||||||||| | ||||| || ||||| || | |
|
|
| T |
39622324 |
agtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagag |
39622225 |
T |
|
| Q |
193 |
gttatattgatgggagcataaaaatttctgg |
223 |
Q |
| |
|
| ||||||| ||||| ||| | ||||||||| |
|
|
| T |
39622224 |
gatatattggtgggaccatcacaatttctgg |
39622194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 286
Target Start/End: Complemental strand, 39538258 - 39538077
Alignment:
| Q |
105 |
agacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatg |
204 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| || | || || || ||||| ||| |||||||||| | ||||||| |||||| |||| ||||||| || |
|
|
| T |
39538258 |
agaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtg |
39538159 |
T |
|
| Q |
205 |
ggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatcca |
286 |
Q |
| |
|
||| ||| | ||||||||| || || || |||||||| || ||||| ||||| || || || |||||||| | ||||||||| |
|
|
| T |
39538158 |
ggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatcca |
39538077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 2149130 - 2149006
Alignment:
| Q |
78 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
177 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| || || ||||||||||||||||| ||||| ||||| || |||||||| |||||||| || |||| |
|
|
| T |
2149130 |
cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggatgttttagctg |
2149031 |
T |
|
| Q |
178 |
gtaggaaaactagtggttatattga |
202 |
Q |
| |
|
| | ||||||||||| || ||||| |
|
|
| T |
2149030 |
gaataaaaactagtggatacattga |
2149006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 2161113 - 2160986
Alignment:
| Q |
78 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
177 |
Q |
| |
|
||||||||||| | | ||| || ||||| ||||| || || || |||||||||||||| ||||| || || || |||||| | |||||||| || |||| |
|
|
| T |
2161113 |
cttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtgtaagtggtgccggaaagactactctaatggatgttttagctg |
2161014 |
T |
|
| Q |
178 |
gtaggaaaactagtggttatattgatgg |
205 |
Q |
| |
|
| ||||||||| |||| ||||||||||| |
|
|
| T |
2161013 |
gaaggaaaactggtggatatattgatgg |
2160986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 49773090 - 49773175
Alignment:
| Q |
102 |
tttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaac |
187 |
Q |
| |
|
|||||||| || ||||| |||||| | |||||| | ||||||||||||||||| ||| | |||||||| || |||| |||||||| |
|
|
| T |
49773090 |
tttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaac |
49773175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University