View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9993_low_15 (Length: 271)

Name: NF9993_low_15
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9993_low_15
NF9993_low_15
[»] chr5 (17 HSPs)
chr5 (8-255)||(37429269-37429525)
chr5 (146-250)||(37640547-37640651)
chr5 (146-250)||(37697462-37697566)
chr5 (146-250)||(37400193-37400297)
chr5 (146-250)||(37436382-37436486)
chr5 (216-250)||(37392339-37392373)
chr5 (13-79)||(37594866-37594932)
chr5 (146-250)||(37533775-37533879)
chr5 (146-250)||(37824570-37824674)
chr5 (13-79)||(37400364-37400430)
chr5 (216-250)||(37595069-37595103)
chr5 (13-79)||(37697329-37697395)
chr5 (13-79)||(37824437-37824503)
chr5 (13-250)||(37412657-37412894)
chr5 (13-70)||(37712166-37712223)
chr5 (13-61)||(37533642-37533690)
chr5 (13-57)||(37640414-37640458)
[»] chr4 (2 HSPs)
chr4 (146-250)||(16842257-16842361)
chr4 (118-182)||(24217189-24217253)
[»] chr3 (1 HSPs)
chr3 (216-250)||(14553783-14553817)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 37429269 - 37429525
Alignment:
Q  8 gagtgagatgaaacaatgatgatggaacttggcctattaggttat----taaaggaaaatactaaattttctaattcggtaagcttgtggaacacatccg 103  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37429269 gagttagatgaaacaatgatgatggaacttggcctgttaggttatttattaaaggaaaatactaaaatttctaattcggtaagcttgtggaacacatccg 37429368  T
Q  104 agatcataccgttgaagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaa-----ataatggtggaatctcaccactaaagttgtta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||    
T  37429369 agatcataccgttgaagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaaataatataatggtggaatctcaccactaaagttgtta 37429468  T
Q  199 gtagagaggtctaactttgttagttgagtgaggttccacaaagatagaggaagaaca 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429469 gtagagaggtctaactttgttagttgagtgaggttccacaaagatagaggaagaaca 37429525  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 37640547 - 37640651
Alignment:
Q  146 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 245  Q
    |||||||| |||||||||||| ||||||||  ||||||||| |||  || |||   || ||||| || | ||||||||| ||||||||||||||||||||    
T  37640547 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccattaagtttattaaatgaaaggtccaaatatgttagttgggtgaggttccacaaagatag 37640646  T
Q  246 aggaa 250  Q
    |||||    
T  37640647 aggaa 37640651  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 37697462 - 37697566
Alignment:
Q  146 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 245  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || ||| | || || || || | ||||||||||||||||||||||||||||||    
T  37697462 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattatttgaaagatccaaatatgttagttgagtgaggttccacaaagatag 37697561  T
Q  246 aggaa 250  Q
    |||||    
T  37697562 aggaa 37697566  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 37400297 - 37400193
Alignment:
Q  146 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 245  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || |||   || ||||| || | ||||||||| ||||||||||||||||||||    
T  37400297 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattaaatgaaaggtccaaatatgttagttgggtgaggttccacaaagatag 37400198  T
Q  246 aggaa 250  Q
    |||||    
T  37400197 aggaa 37400193  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 37436382 - 37436486
Alignment:
Q  146 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 245  Q
    ||||||||| | ||||||||| |||||||| ||||||||   |||  || ||  | || ||||| || | ||||||||||||||||||||||||||||||    
T  37436382 tgaggtgtgaggggtttgaaagtaatggtgaaatctcactgttaagtttatttcttgaaaggtccaaatatgttagttgagtgaggttccacaaagatag 37436481  T
Q  246 aggaa 250  Q
    |||||    
T  37436482 aggaa 37436486  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 37392373 - 37392339
Alignment:
Q  216 tgttagttgagtgaggttccacaaagatagaggaa 250  Q
    |||||||||||||||||||||||||||||||||||    
T  37392373 tgttagttgagtgaggttccacaaagatagaggaa 37392339  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 37594866 - 37594932
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 79  Q
    |||||||| | ||||||||||||||||||| ||||||| |||||||||| | |||||| ||| ||||    
T  37594866 agatgaaaaagtgatgatggaacttggcctgttaggttgttaaaggaaagtgctaaatattccaatt 37594932  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 37533775 - 37533879
Alignment:
Q  146 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 245  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || |||   || || || || | ||||||||| ||||||||||||||||||||    
T  37533775 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattatgtgaaagatccaaatatgttagttgggtgaggttccacaaagatag 37533874  T
Q  246 aggaa 250  Q
    |||||    
T  37533875 aggaa 37533879  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 37824570 - 37824674
Alignment:
Q  146 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 245  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || ||    || ||||| || | ||||||||| ||||||||||||||||||||    
T  37824570 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagcttattttgtgaaaggtccaaatatgttagttgggtgaggttccacaaagatag 37824669  T
Q  246 aggaa 250  Q
    |||||    
T  37824670 aggaa 37824674  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 37400430 - 37400364
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 79  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | |||||| ||| ||||    
T  37400430 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaatattccaatt 37400364  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 37595069 - 37595103
Alignment:
Q  216 tgttagttgagtgaggttccacaaagatagaggaa 250  Q
    ||||||||| |||||||||||||||||||||||||    
T  37595069 tgttagttgggtgaggttccacaaagatagaggaa 37595103  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 37697329 - 37697395
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 79  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | |||||| ||| ||||    
T  37697329 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaatattccaatt 37697395  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 37824437 - 37824503
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaatt 79  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | |||||| ||| ||||    
T  37824437 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaatattccaatt 37824503  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 37412894 - 37412657
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaattttctaattcggtaagcttgtggaacacatccgagatcatac 112  Q
    ||||| ||||||||||| |||| ||| ||| | | ||| ||| ||||||   |||||| ||||||||   ||||||| ||||||| || | |||||| ||    
T  37412894 agatggaacaatgatgagggaatttgacctgtaatgttgttagaggaaatatctaaatattctaatttaataagcttatggaacatattcaagatcaaac 37412795  T
Q  113 cgttgaagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaa 212  Q
    || | |||  ||| | | ||||| | |||  |||||| |||| ||| ||||||| ||||| ||| || |||||  |||  ||||||   || ||||| ||    
T  37412794 cggtaaaggcattttgttcaagatccaagtaagtgagatgtgcgagatttgaaagtaatgatgggatttcaccgttaagtttgttaaatgaaaggtccaa 37412695  T
Q  213 ctttgttagttgagtgaggttccacaaagatagaggaa 250  Q
     | ||||||||||||||||||||| |||||| ||||||    
T  37412694 atgtgttagttgagtgaggttccataaagattgaggaa 37412657  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 37712166 - 37712223
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaaatactaaat 70  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| |||||| | ||||||    
T  37712166 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaagtgctaaat 37712223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 37533642 - 37533690
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaaggaaa 61  Q
    |||||||| | ||||||||||||||||||| ||||||| ||| ||||||    
T  37533642 agatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaa 37533690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 37640414 - 37640458
Alignment:
Q  13 agatgaaacaatgatgatggaacttggcctattaggttattaaag 57  Q
    |||||||| | ||||||||||||||||||| ||||||| ||||||    
T  37640414 agatgaaaaagtgatgatggaacttggcctgttaggttgttaaag 37640458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 16842361 - 16842257
Alignment:
Q  146 tgaggtgtgtgaggtttgaaaataatggtggaatctcaccactaaagttgttagtagagaggtctaactttgttagttgagtgaggttccacaaagatag 245  Q
    |||||||| |||||||||||| ||||||||  ||||||||  |||  || ||| | || || || || | ||||||||||||||||||||||||||||||    
T  16842361 tgaggtgtttgaggtttgaaagtaatggtgagatctcaccgttaagtttattatttgaaagatccaaatatgttagttgagtgaggttccacaaagatag 16842262  T
Q  246 aggaa 250  Q
    |||||    
T  16842261 aggaa 16842257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 24217253 - 24217189
Alignment:
Q  118 aagttattatttccaagaccaaaggtagtgaggtgtgtgaggtttgaaaataatggtggaatctc 182  Q
    ||||||||| ||  |||| | |||| ||||||||||||||||||||||| ||||| ||| |||||    
T  24217253 aagttattaatttgaagatctaaggaagtgaggtgtgtgaggtttgaaagtaatgatgggatctc 24217189  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 14553783 - 14553817
Alignment:
Q  216 tgttagttgagtgaggttccacaaagatagaggaa 250  Q
    |||||||||||||||||||||||||||||||||||    
T  14553783 tgttagttgagtgaggttccacaaagatagaggaa 14553817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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