View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_22 (Length: 252)
Name: NF9993_low_22
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 4840818 - 4840618
Alignment:
| Q |
20 |
cttacataacaatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagatt |
119 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840818 |
cttacataacaatattgttagccttcataacagtgttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagatt |
4840719 |
T |
|
| Q |
120 |
ttttccaaattttccattttattgatgagtgtccatagt---acctgttgaaatgtggagtcgcaaatatttggatattataatttttatctttagcttt |
216 |
Q |
| |
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|||||||| ||||||||| |||| | ||||||||||||| | || | |||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
4840718 |
ttttccaacttttccattgtattaaagagtgtccatagtttaaacttt----atgtggagtctaaaatatttggatattgtaatttttatctttagcttt |
4840623 |
T |
|
| Q |
217 |
aattt |
221 |
Q |
| |
|
||||| |
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|
| T |
4840622 |
aattt |
4840618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 5197445 - 5197666
Alignment:
| Q |
20 |
cttacataacaatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagatt |
119 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5197445 |
cttacataacaatactattggccttcataacagtgttgtgcatcaatccacgttggcgcatggcctggttttattacatcagtaagtttatgcgtagatt |
5197544 |
T |
|
| Q |
120 |
ttttccaaattttccattttattgatgagtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagct |
214 |
Q |
| |
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||||||| ||||||||| |||||| ||||| ||||||| ||||||||| |||||||||| |||||||||| ||||| |||||||||| |||| || |
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| T |
5197545 |
ctttccaacttttccattgtattgaagagtggccatagttcctgttgaaacattatgtggagtctcaaatatttgcatattgtaatttttatatttacct |
5197644 |
T |
|
| Q |
215 |
ttaatttc-gacagtttgatgt |
235 |
Q |
| |
|
|||||||| |||| |||||||| |
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|
| T |
5197645 |
ttaatttcagacaatttgatgt |
5197666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 5174704 - 5174904
Alignment:
| Q |
20 |
cttacataacaatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagatt |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5174704 |
cttacataacaatattgttggccctcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattatatcagtaagtttatgcgtagatt |
5174803 |
T |
|
| Q |
120 |
ttttccaaattttccattttattgatgagtgtccatagt---acctgttgaaatgtggagtcgcaaatatttggatattataatttttatctttagcttt |
216 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||||| | || | |||||||||| |||||||||||||||| ||||||||| |||||||||| |
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|
| T |
5174804 |
ttttccaacttttccattgtattgaagagtgtccatagtttaaacttt----atgtggagtctcaaatatttggatattgtaatttttacctttagcttt |
5174899 |
T |
|
| Q |
217 |
aattt |
221 |
Q |
| |
|
||||| |
|
|
| T |
5174900 |
aattt |
5174904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 5215590 - 5215810
Alignment:
| Q |
20 |
cttacataacaatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagatt |
119 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
5215590 |
cttacataacaatactattggccttcataacagtgttgtgcgtcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtaaaat |
5215689 |
T |
|
| Q |
120 |
ttttccaaattttccattttattgatgagtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagct |
214 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| | | ||||||||| | ||| |||| |||||||||||||||| |||||||||| |||| || |
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|
| T |
5215690 |
ttttccaacgtttccattgtattgaagagtgtctgttattcctgttgaaacttcaagtgaagtctcaaatatttggatattgtaatttttatatttacct |
5215789 |
T |
|
| Q |
215 |
ttaatttc-gacagtttgatg |
234 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
5215790 |
ttaatttcagacagtttgatg |
5215810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 5184054 - 5184264
Alignment:
| Q |
28 |
acaatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaa |
127 |
Q |
| |
|
|||||| | |||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
5184054 |
acaatactattggccttcataactgtgttgggcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattctttccat |
5184153 |
T |
|
| Q |
128 |
attttccattttattgatgagtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagctttaatttc |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| | || ||||||| |||| | |||||| | |
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| T |
5184154 |
cttttccattatattgatgagtgtccatagttcctgttgaaactttatgtggagtctaaaatatttggatactgtattttttatatttaccgttaattcc |
5184253 |
T |
|
| Q |
223 |
-gacagtttga |
232 |
Q |
| |
|
|||||||||| |
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|
| T |
5184254 |
agacagtttga |
5184264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 5161765 - 5161985
Alignment:
| Q |
20 |
cttacataacaatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||| || || |
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|
| T |
5161765 |
cttacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcgtatggcttggttttattacattagtaagtttgcacgattttt |
5161864 |
T |
|
| Q |
120 |
ttttccaaattttccattttattgatgagtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagct |
214 |
Q |
| |
|
|||||||| ||||||||| || ||| |||||| | |||||||||||||| | |||||||| |||||||||||||||| |||||||||| |||| | |
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|
| T |
5161865 |
ttttccaacttttccattgtactgaagagtgtacgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcg |
5161964 |
T |
|
| Q |
215 |
ttaatttc-gacagtttgatg |
234 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
5161965 |
ttaatttcagacagtttgatg |
5161985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 4855324 - 4855106
Alignment:
| Q |
20 |
cttacataacaatattgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagatt |
119 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| ||||||||| | ||| || |
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|
| T |
4855324 |
cttacataacaatactactgaccttcataacagtgttg--catcaatccacgttggcgtttggcctggttttattacattagtaagtttgtaggtatctt |
4855227 |
T |
|
| Q |
120 |
ttttccaaattttccattttattgatgagtgtccatagtacctgttgaa-----atgtggagtcgcaaatatttggatattataatttttatctttagct |
214 |
Q |
| |
|
|||||||| ||||||||| |||| | |||||||| |||||||||||||| |||||||||| ||||||||||| |||| |||||||||| |||| || |
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|
| T |
4855226 |
ttttccaacttttccattgtattaaagagtgtccgtagtacctgttgaaactttatgtggagtctcaaatatttgggtattgtaatttttatatttaact |
4855127 |
T |
|
| Q |
215 |
ttaatttc-gacagtttgatg |
234 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
4855126 |
ttaatttcagacagtttgatg |
4855106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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