View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9993_low_23 (Length: 251)
Name: NF9993_low_23
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_23 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0001 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 506245 - 506473
Alignment:
| Q |
1 |
gttacttgatcaccaatactctctacaacactgcatttcatcagattatttgtagatgtaaactatagattcatatgtggtctatagtaaagactatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
506245 |
gttacttgatcaccaatactctctacaacactgcatttcatcagattatttgtagatgtaaactatagattcatctgtggtctatagtaaagactatata |
506344 |
T |
|
| Q |
101 |
cattgaat-aatctgaaatataaatttttacttattatagtgaccggaagatgtaagtcacaacacaaagtatttctatctcttgattatatttatagga |
199 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506345 |
cattgaatgaatctgaaata------------tattatagtgaccggaaggtgtaagtcacaacacaaagtatttctatctcttgattatatttatagga |
506432 |
T |
|
| Q |
200 |
gaatgtaataattaagagaaagctttacccaattccttcat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506433 |
gaatgtaataattaagagaaagctttacccaattccttcat |
506473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 42530532 - 42530487
Alignment:
| Q |
109 |
aatctgaaatataaatttttacttattatagtgaccggaagatgta |
154 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
42530532 |
aatctaaaatgtaaatttttacttataatagtgaccggatgatgta |
42530487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 41346507 - 41346471
Alignment:
| Q |
109 |
aatctgaaatataaatttttacttattatagtgaccg |
145 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
41346507 |
aatctaaaatataaatttttacttataatagtgaccg |
41346471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 52215920 - 52215872
Alignment:
| Q |
109 |
aatctgaaatataaatttttacttattatagtgaccggaagatgtaagt |
157 |
Q |
| |
|
||||| |||| ||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
52215920 |
aatctaaaatgtaaatttttgcttataatagtgaccggaggatgtaagt |
52215872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University