View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_26 (Length: 250)
Name: NF9993_low_26
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31432585 - 31432346
Alignment:
| Q |
1 |
caacacaaaagagcacaagttcaattatgtttacctatagatattggttaggacatgtggattaaaagtgactatgacattgcttactatatgaagagag |
100 |
Q |
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| T |
31432585 |
caacacaaaagagcacaagttcaattatgtttacctatagagtttggttaggacatgtggattaaaagtgacaatgccattgcttactatatgaagagag |
31432486 |
T |
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| Q |
101 |
aacagggtggtgaaaaactctggagtgaacaatcgccaaaagtggtaatgtacgtctagcaacaacaaagatacacatgctttttaacataaaaactacg |
200 |
Q |
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| T |
31432485 |
aacagggtggtgaaaaactctggagtgaacaatcgccaaaagtggtaatgtacgtctagcaacaacaaagatacacatgctttttaacataaaaactacg |
31432386 |
T |
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| Q |
201 |
gttttaaaagtagaactaagtgagaacctatagacctttg |
240 |
Q |
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| T |
31432385 |
gttttaaaagtagaactaagtgagaacctatagacctttg |
31432346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 31431419 - 31431197
Alignment:
| Q |
9 |
aagagcacaagttcaattatgtttaccta-tagatattggttaggacatgtggattaaaagtgactatgacattgcttactatatgaagagagaacaggg |
107 |
Q |
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| T |
31431419 |
aagagctcaagttcaattatgtttcagtagttgacattggtctggatatgtggattaaaagtgacattgtcattatttactatatgaagaga--accagg |
31431322 |
T |
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| Q |
108 |
tggtgaaaaactctggagtgaacaatcgccaaaagtggtaatgtacgtc--tagcaacaacaaagatacacatgctttttaacataaaaactacggtttt |
205 |
Q |
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| T |
31431321 |
tgat-aaaaactctggagtgaacaaacgtcaaaagtagcaatgtgagtctatataagaaacaaagaaacgcatgctttttaacataagaactacag-ttt |
31431224 |
T |
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| Q |
206 |
aaaagtagaactaagtgagaacctata |
232 |
Q |
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| T |
31431223 |
aaaagcagaactgaccgagaacctata |
31431197 |
T |
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