View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_27 (Length: 247)
Name: NF9993_low_27
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 2876793 - 2876652
Alignment:
| Q |
103 |
caattcgaaaccttgattatctaaaccaaatgctaattaataacttcgaaaatgacttacttgtggcacgtcaacagagtatacaatttcgtcaaatgtg |
202 |
Q |
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| T |
2876793 |
caattcgaaaccttgattatctaaaccaaatgctaattaataacttcgaaaatgacttacttgtggcacgtcaacagagtatacaatttcgtcaaatgtg |
2876694 |
T |
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| Q |
203 |
atagaatatggttcaaaaggtagaaccattcccctttgcttc |
244 |
Q |
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| T |
2876693 |
atagaatatggttcaaaaggtagaaccattcccctttccttc |
2876652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2876861 - 2876789
Alignment:
| Q |
1 |
gactgcatcctaactatgattttggtcgcatcaactacatttgaccatgaaattttccacaatgtcaacaatt |
73 |
Q |
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| T |
2876861 |
gactgcatcctaactatgattttggtcgcatcaactacatttgaccatgaaattttccacaatgtcaacaatt |
2876789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 2897618 - 2897712
Alignment:
| Q |
145 |
acttcgaaaatgacttacttgtggcacgtcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattccccttt |
239 |
Q |
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| T |
2897618 |
actttgaaaatgacttacctgtggcatgtcaactgaatatacaacttggtcaaagattatagaatgtggttcaaaaggaagaatcattccccttt |
2897712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 2886744 - 2886667
Alignment:
| Q |
157 |
acttacttgtggcacgtcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattcc |
234 |
Q |
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| T |
2886744 |
acttacctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
2886667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 44211408 - 44211477
Alignment:
| Q |
166 |
tggcacgtcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattccc |
235 |
Q |
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| T |
44211408 |
tggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattccc |
44211477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 44234392 - 44234461
Alignment:
| Q |
166 |
tggcacgtcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattccc |
235 |
Q |
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| T |
44234392 |
tggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattccc |
44234461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 44223577 - 44223639
Alignment:
| Q |
173 |
tcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattccc |
235 |
Q |
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| T |
44223577 |
tcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattccc |
44223639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 39564839 - 39564884
Alignment:
| Q |
194 |
tcaaatgtgatagaatatggttcaaaaggtagaaccattccccttt |
239 |
Q |
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| T |
39564839 |
tcaaaggttatagaatgtggttcaaaaggaagaaccattccccttt |
39564884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 39338034 - 39337958
Alignment:
| Q |
159 |
ttacttgtggcacgtcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattccc |
235 |
Q |
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| T |
39338034 |
ttacctgtggcatgtctacagaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattccc |
39337958 |
T |
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