View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_28 (Length: 245)
Name: NF9993_low_28
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 42944581 - 42944712
Alignment:
| Q |
1 |
acagtcaacaagcattcagacttcatgctataccatatgtcagaaaaacttgcacacatgttgaaggtccctgaaatcatcttccaacagtttttcctac |
100 |
Q |
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| T |
42944581 |
acagacaacaaacattcagacttcatgctataccatatgtcagaaaaacttgcacacatgttgaaggtccctgaaatcatcttccaacagtttttcctac |
42944680 |
T |
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| Q |
101 |
tgctataatatctttgattcttagtacaataa |
132 |
Q |
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| T |
42944681 |
tgctataatatctttgattcttagaacaataa |
42944712 |
T |
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Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 42944742 - 42944838
Alignment:
| Q |
131 |
aaaagttccacattgaagactaaactcagattttggaaaaaagtccttgaaaacaatctaggttttttatgtctctgcaagacggcaaccatgtcac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944742 |
aaaagttccacattgaagactaaactcagattttggaaaaaagtccttgaaaacaatctaggttttttatgtctctgcaagacggcaaccatgtcac |
42944838 |
T |
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