View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9993_low_29 (Length: 242)
Name: NF9993_low_29
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38183043 - 38182819
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183043 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
38182944 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38182943 |
cgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgtttt |
38182844 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38182843 |
ccgatgtttgcttcaagtatcaact |
38182819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38188088 - 38188312
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188088 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
38188187 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38188188 |
cgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgtttt |
38188287 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38188288 |
ccgatgtttgcttcaagtatcaact |
38188312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38210269 - 38210045
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210269 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
38210170 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38210169 |
cgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgtttt |
38210070 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38210069 |
ccgatgtttgcttcaagtatcaact |
38210045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38169557 - 38169781
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169557 |
cagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
38169656 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38169657 |
cttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgtttt |
38169756 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38169757 |
ccgatgtttgcttcaagtatcaact |
38169781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38183237 - 38183461
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183237 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
38183336 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38183337 |
cgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggcaaagctttccacgttcatgtttt |
38183436 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38183437 |
ccgatgtttgcttcaagtatcaact |
38183461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38185346 - 38185570
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38185346 |
cagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaacctaggcttacttctcttcatgatcat |
38185445 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38185446 |
cgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgtttt |
38185545 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38185546 |
ccgatgtttgcttcaagtatcaact |
38185570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38213011 - 38212787
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38213011 |
cagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaacctaggcttacttctcttcatgatcat |
38212912 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38212911 |
cgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgtttt |
38212812 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38212811 |
ccgatgtttgcttcaagtatcaact |
38212787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38215120 - 38214896
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215120 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
38215021 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38215020 |
cgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggcaaagctttccacgttcatgtttt |
38214921 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38214920 |
ccgatgtttgcttcaagtatcaact |
38214896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38215314 - 38215537
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38215314 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaa-tccaacctaggcttactgctcttcatgatcat |
38215412 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgtttt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38215413 |
cgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgtttt |
38215512 |
T |
|
| Q |
201 |
ccgatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
38215513 |
ccgatgtttgtttcaagtatcaact |
38215537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 38453349 - 38453129
Alignment:
| Q |
3 |
gtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcg |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
38453349 |
gtaccctctcaaaac--tttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccaaggcttacttctcttcatgatcatcg |
38453252 |
T |
|
| Q |
103 |
tcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgttttcc |
202 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38453251 |
tcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccatattcatgttttcc |
38453152 |
T |
|
| Q |
203 |
gatgtttgcttcaagtatcaact |
225 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38453151 |
gatgtttgcttcaagtatcaact |
38453129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 38443145 - 38443366
Alignment:
| Q |
4 |
taccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443145 |
taccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacttatggtggagaaatccaacctaggcttactgctcttcatgatcatcgt |
38443244 |
T |
|
| Q |
104 |
cggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgttttccg |
203 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
38443245 |
cgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttcctcattcatggtttcca |
38443344 |
T |
|
| Q |
204 |
atgtttgcttcaagtatcaact |
225 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38443345 |
atgtttgcttcaagtatcaact |
38443366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 38197547 - 38197370
Alignment:
| Q |
1 |
cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38197547 |
cagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcat |
38197448 |
T |
|
| Q |
101 |
cgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggca |
178 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
38197447 |
cttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggca |
38197370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 38452167 - 38452129
Alignment:
| Q |
65 |
aaaatccaacctaggcttactgctcttcatgatcatcgt |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
38452167 |
aaaatccaacctagacttactgctcttcatgttcatcgt |
38452129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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