View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_31 (Length: 240)
Name: NF9993_low_31
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45860086 - 45860307
Alignment:
| Q |
1 |
tatgagaatcatatatatatttatgcatctccctggttgagagttttatatataatatacaaatacacattgagtacctttattatgcatcttnnnnnnn |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45860086 |
tatgagaatcatatatat--ttatgcatctccctggttgagagttttatatataatatacaaatacacattgagtacctttattatgcatcttacacaca |
45860183 |
T |
|
| Q |
101 |
nnnnnntaaacctgaaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacacccttaatctgtgactgtttact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45860184 |
cacacataaacctgaaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacacccttggtctgtgactgtttact |
45860283 |
T |
|
| Q |
201 |
cggcccaattaataaggtactcgg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
45860284 |
cggcccaattaataaggtactcgg |
45860307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 27003861 - 27004026
Alignment:
| Q |
17 |
atatttatgcatctccctggttgagagttttatatataatatacaaatacaca--ttgagtacctttattatgcatcttnnnnnnnnnnnnntaaacctg |
114 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||| ||| ||| |||||||| || |||||||||||| |||||||| |
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| T |
27003861 |
atatttatgcatctccttagttgagagttttatatataatatacatataaacactttgagtacattcattatgcatcttacacacacaca--taaacctg |
27003958 |
T |
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| Q |
115 |
aaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacaccctt |
182 |
Q |
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| T |
27003959 |
aaccgtcgtaaaacatttcactataactgaatggttggaattaaatcacaacttatttcaataccctt |
27004026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 35537382 - 35537217
Alignment:
| Q |
17 |
atatttatgcatctccctggttgagagttttatatataatatacaaatacaca--ttgagtacctttattatgcatcttnnnnnnnnnnnnntaaacctg |
114 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||||| ||| ||| |||||||| || |||||||||||| |||||||| |
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| T |
35537382 |
atatttatgcatctccttagttgagagttttatatataatatacatataaacactttgagtacattcattatgcatcttacacacacaca--taaacctg |
35537285 |
T |
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| Q |
115 |
aaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacaccctt |
182 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
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| T |
35537284 |
aaccgtcgtaaaacatttcactataactgaatggttggaattaaatcacaacttatttcaataccctt |
35537217 |
T |
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