View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9993_low_4 (Length: 452)

Name: NF9993_low_4
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9993_low_4
NF9993_low_4
[»] chr4 (2 HSPs)
chr4 (18-384)||(25813330-25813704)
chr4 (382-443)||(25813211-25813272)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 25813704 - 25813330
Alignment:
Q  18 actttgtacatgtttctggttagtgatatatccaatgcacaacaatgtgcaacttctgcattcagacaatgcttcttcaaaactttgcatgttttgctca 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25813704 actttgtacatgtttctggttagtgatgtatccaatgcacaacaatgtgcaacttctgcattcagacaatgcttcttcaaaactttgcatgttttgctca 25813605  T
Q  118 aattgagaagatctttcagtgaagatgtagcaactaacgtaattataaagattaaaacatcatcagagagttctggaagcatattgttttggtggtttat 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25813604 aattgagaagatctttcagtgaagatgtagcaaccaacgtaattataaagattaaaacatcgtcagagagttctggaagcatattgttttggtggtttat 25813505  T
Q  218 ttcaactacaaaaatatatttgattgaagtttgcttctgcagggttatcttttttatgtgtgaaagttgttatatgatggatacattttatagttttat- 316  Q
    |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25813504 ttcacctac-aaaatatatttgagtgaagtttgcttctgcagggttatcttttttatgtgtgaaagttgttatatgatggatacattttatagttttata 25813406  T
Q  317 --------aattaaggacttgattgttgattatcaatcaatacgtttggtatgaaaagttgtgtcaattgatattg 384  Q
            |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  25813405 agtcagagaattaacgacttgattgttgattatcaatcaatacgtttggtatgaaaaattgtgtcagttgatattg 25813330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 25813272 - 25813211
Alignment:
Q  382 ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgc 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25813272 ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgc 25813211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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