View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_5 (Length: 401)
Name: NF9993_low_5
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 43853842 - 43854161
Alignment:
| Q |
17 |
agttatcacgtaccttaccttggatgatcgaaggatccatagagaatttagtaagacttggaagaattatgatacttttccctcttattgatgagtaaca |
116 |
Q |
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| T |
43853842 |
agttatcacgtaccttaccttggatgatcgaaggatccatagagaatttagtaagacttggaagaattatgatacttttccctcttattgatgagtaaca |
43853941 |
T |
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| Q |
117 |
tgtttaaatgactatattatataagctcatcagtgaaggcatgaatgaatctctcaagtctcaaaaggctaactaaaagaacaatc-------------- |
202 |
Q |
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| T |
43853942 |
tgtttaaatgactatattatataagctcatcagtgaaggcatgaatgaatctctcaagtctcaaaaggctaactaaaagaacaatccaatacatcacgac |
43854041 |
T |
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| Q |
203 |
-------caataaagtctaatataatatttcattactatatttcattaagg-nnnnnnnggtgaacaaaataattgaataaaagttatccacatattggg |
294 |
Q |
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| T |
43854042 |
cggttcacaataaagtctaatataatatttaattactatatttcattaaggttttttttggtgaacaaaataattgaataaaagttatccacatattggg |
43854141 |
T |
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| Q |
295 |
accaatttgacgttttaggt |
314 |
Q |
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| T |
43854142 |
accaatttgacgttttaggt |
43854161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 43854161 - 43854209
Alignment:
| Q |
353 |
tttttgttaaaaaatgcacacatagagaacattgttctgttttaaagtt |
401 |
Q |
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| T |
43854161 |
tttttgttaaaaaatgcacatatagagaacattgttctgttttaaagtt |
43854209 |
T |
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