View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_7 (Length: 350)
Name: NF9993_low_7
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 46341737 - 46341414
Alignment:
| Q |
11 |
caaagggtgagggttttggaagggggaatggagttgtgccaaattaatttatcctaactaacattctgaccaccagggcagtgagatgtgtaagcttctt |
110 |
Q |
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| T |
46341737 |
caaagggtgagggttttggaagggggaatggagttgtgccaaattaatttagcccaactaacattctgacccccagggcagtgaaatgtgtaagcttctt |
46341638 |
T |
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| Q |
111 |
taaaagatagggtgccatcgtgagaatgtttccaagagatactgtcatcagtctgaataatgggaatgactgtgttagcaattaattggctaagtgcaag |
210 |
Q |
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| T |
46341637 |
taaaagagagggtgccatcatgagaatgtttccaagagatgctgtcatcagtctgaataatgggaatgactgtgttagcaattaattggctaagtgcaag |
46341538 |
T |
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| Q |
211 |
ataggcttgtaggatgcaagttgagatatttcagcaaaagttgtaaatgtaactgtttagagtagattgaagcaggctatgaagatgttgatggatatga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46341537 |
ataggcttgtaggatgcaagttgagatatttcagcaagagttgtaaatgtaactgtttagagtagattgaagcaggctatgaagatgttgatggatatga |
46341438 |
T |
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| Q |
311 |
atagtatgaaccagagggtctcca |
334 |
Q |
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| T |
46341437 |
agagtatgaaccagagggtctcca |
46341414 |
T |
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